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  5. Sacu_v1.1_s0048.g013622

Sacu_v1.1_s0048.g013622


Description : component *(uS12) of small ribosomal-subunit (SSU) proteome & original description: CDS=104-532


Gene families : OG0002074 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002074_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0048.g013622
Cluster HCCA: Cluster_61

Target Alias Description ECC score Gene Family Method Actions
Ala_g11128 No alias component *(uS12) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Azfi_s4142.g118106 No alias component *(uS12) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001264.27 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
Cre12.g504200 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
Dcu_g04209 No alias component *(uS12) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
GSVIVT01025120001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
Gb_36570 No alias component RPS23 of SSU proteome 0.02 OrthoFinder output from all 47 species
Mp2g08680.1 No alias component RPS23 of SSU proteome 0.03 OrthoFinder output from all 47 species
Pp3c11_11070V3.1 Pp3c11_11070 Ribosomal protein S12/S23 family protein 0.04 OrthoFinder output from all 47 species
Pp3c4_3120V3.1 Pp3c4_3120 Ribosomal protein S12/S23 family protein 0.02 OrthoFinder output from all 47 species
Pp3c7_14200V3.1 Pp3c7_14200 Ribosomal protein S12/S23 family protein 0.01 OrthoFinder output from all 47 species
Sam_g19537 No alias component *(uS12) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Sam_g23987 No alias component *(uS12) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Solyc10g086020.3.1 Solyc10g086020 component RPS23 of SSU proteome 0.03 OrthoFinder output from all 47 species
Tin_g26329 No alias component *(uS12) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Zm00001e019377_P001 Zm00001e019377 component RPS23 of SSU proteome 0.03 OrthoFinder output from all 47 species
Zm00001e027265_P001 Zm00001e027265 component RPS23 of SSU proteome 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004435 phosphatidylinositol phospholipase C activity IEP HCCA
MF GO:0004620 phospholipase activity IEP HCCA
MF GO:0004629 phospholipase C activity IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
MF GO:0008081 phosphoric diester hydrolase activity IEP HCCA
MF GO:0008097 5S rRNA binding IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0016298 lipase activity IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
InterPro domains Description Start Stop
IPR006032 Ribosomal_S12/S23 30 141
No external refs found!