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  5. Sacu_v1.1_s0045.g013143

Sacu_v1.1_s0045.g013143


Description : not classified & original description: CDS=1-1056


Gene families : OG0000697 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000697_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0045.g013143

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00202p00021010 evm_27.TU.AmTr_v1... BTB/POZ domain-containing protein At4g08455... 0.02 OrthoFinder output from all 47 species
Adi_g015450 No alias substrate adaptor of CUL3-based E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Ala_g05162 No alias substrate adaptor of CUL3-based E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Ala_g13839 No alias substrate adaptor of CUL3-based E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
GSVIVT01032719001 No alias BTB/POZ domain-containing protein At3g56230... 0.02 OrthoFinder output from all 47 species
Mp1g13890.1 No alias BTB/POZ domain-containing protein At3g56230... 0.02 OrthoFinder output from all 47 species
Mp6g09780.1 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Mp7g11260.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Spa_g10991 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR000210 BTB/POZ_dom 150 251
No external refs found!