1. Home
  2. Species
  3. Salvinia cucullata
  4. Sequence
  5. Sacu_v1.1_s0044.g013104

Sacu_v1.1_s0044.g013104


Description : not classified & original description: CDS=32-2083


Gene families : OG0000142 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000142_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0044.g013104

Target Alias Description ECC score Gene Family Method Actions
AT3G16010 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G61360 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
Aev_g03187 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g06010 No alias group-II intron mitochondrial splicing factor *(MISF68)... 0.03 OrthoFinder output from all 47 species
Aev_g28149 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g12835 No alias group-II intron mitochondrial splicing factor *(MISF68)... 0.04 OrthoFinder output from all 47 species
Aob_g26096 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g07047 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g23072 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g13495 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01008815001 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.03 OrthoFinder output from all 47 species
GSVIVT01015982001 No alias Pentatricopeptide repeat-containing protein At1g80880,... 0.03 OrthoFinder output from all 47 species
GSVIVT01017111001 No alias Pentatricopeptide repeat-containing protein At3g16010... 0.03 OrthoFinder output from all 47 species
GSVIVT01017293001 No alias Pentatricopeptide repeat-containing protein At1g52640,... 0.03 OrthoFinder output from all 47 species
GSVIVT01027388001 No alias Pentatricopeptide repeat-containing protein At1g80550,... 0.03 OrthoFinder output from all 47 species
LOC_Os01g05860.1 LOC_Os01g05860 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
LOC_Os02g52220.1 LOC_Os02g52220 Pentatricopeptide repeat-containing protein At1g73400,... 0.03 OrthoFinder output from all 47 species
LOC_Os03g11020.1 LOC_Os03g11020 Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
Len_g24369 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07415 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_12748g0020 No alias Pentatricopeptide repeat-containing protein At1g79540... 0.03 OrthoFinder output from all 47 species
MA_355286g0010 No alias Pentatricopeptide repeat-containing protein At5g15010,... 0.03 OrthoFinder output from all 47 species
MA_8206159g0010 No alias Pentatricopeptide repeat-containing protein At5g15010,... 0.03 OrthoFinder output from all 47 species
Ppi_g13701 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc09g097840.2.1 Solyc09g097840 Pentatricopeptide repeat-containing protein At5g18390,... 0.03 OrthoFinder output from all 47 species
Zm00001e005446_P003 Zm00001e005446 group-II intron mitochondrial splicing factor (MISF68) 0.03 OrthoFinder output from all 47 species
Zm00001e006773_P001 Zm00001e006773 Pentatricopeptide repeat-containing protein At1g80550,... 0.02 OrthoFinder output from all 47 species
Zm00001e025816_P001 Zm00001e025816 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Zm00001e028873_P001 Zm00001e028873 Pentatricopeptide repeat-containing protein At5g15010,... 0.02 OrthoFinder output from all 47 species
Zm00001e036197_P001 Zm00001e036197 Pentatricopeptide repeat-containing protein At1g71060,... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 316 364
IPR002885 Pentatricopeptide_repeat 181 225
IPR002885 Pentatricopeptide_repeat 246 295
IPR002885 Pentatricopeptide_repeat 598 637
IPR002885 Pentatricopeptide_repeat 390 415
IPR002885 Pentatricopeptide_repeat 566 596
IPR002885 Pentatricopeptide_repeat 419 474
IPR002885 Pentatricopeptide_repeat 483 544
No external refs found!