Solyc09g083380.3.1 (Solyc09g083380.3)


Aliases : Solyc09g083380.3

Description : 28.1.3.1 DNA.synthesis/chromatin structure.histone.H1 winged-helix DNA-binding transcription factor family protein


Gene families : OG_01_0000278 (Gene family) Phylogenetic Tree(s): OG0000278_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Solyc09g083380.3.1
Cluster HCCA cluster: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
AT1G06760 No alias winged-helix DNA-binding transcription factor family protein 0.07 Gene family
Cpa|evm.model.tig00020780.71 No alias No description available 0.02 Gene family
Cre13.g567450 No alias No description available 0.02 Gene family
LOC_Os06g04020 Os06g0130800 28.1.3.1 DNA.synthesis/chromatin structure.histone.H1... 0.02 Gene family
MA_102457g0010 No alias 28.1.3.1 DNA.synthesis/chromatin structure.histone.H1... 0.03 Gene family
MA_10436125g0020 No alias No description available 0.04 Gene family
MA_11231g0010 No alias No description available 0.02 Gene family
MA_500183g0010 No alias No description available 0.02 Gene family
MA_6298g0010 No alias 28.1.3.1 DNA.synthesis/chromatin structure.histone.H1... 0.02 Gene family
MA_877599g0010 No alias 28.1.3.1 DNA.synthesis/chromatin structure.histone.H1... 0.02 Gene family
Solyc06g084020.3.1 Solyc06g084020.3 No description available 0.04 Gene family
Zm00001d002601 GRMZM2G080274 28.1.3.1 DNA.synthesis/chromatin structure.histone.H1... 0.25 Gene family
Zm00001d013066 GRMZM2G121221 28.1.3.1 DNA.synthesis/chromatin structure.histone.H1... 0.05 Gene family
Zm00001d013067 GRMZM2G003002 28.1.3.1 DNA.synthesis/chromatin structure.histone.H1... 0.12 Gene family
Zm00001d034479 GRMZM2G164020 28.1.3.1 DNA.synthesis/chromatin structure.histone.H1... 0.07 Gene family

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA InterProScan
MF GO:0003677 DNA binding IEA InterProScan
CC GO:0005634 nucleus IEA InterProScan
BP GO:0006334 nucleosome assembly IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR005818 Histone_H1/H5_H15 20 85
No external refs found!