Sacu_v1.1_s0041.g012541 (ATLIG1, LIG1)


Aliases : ATLIG1, LIG1

Description : EC_6.5 ligase forming phosphoric ester bond & original description: CDS=79-2331


Gene families : OG0001904 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001904_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0041.g012541
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
Ceric.28G053000.1 ATLIG1, LIG1,... EC_6.5 ligase forming phosphoric ester bond & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01031470001 ATLIG1, LIG1 DNA damage response.DNA repair mechanisms.base excision... 0.02 OrthoFinder output from all 47 species
Lfl_g09242 ATLIG1, LIG1 EC_6.5 ligase forming phosphoric ester bond & original... 0.02 OrthoFinder output from all 47 species
Msp_g15129 ATLIG1, LIG1 EC_6.5 ligase forming phosphoric ester bond & original... 0.02 OrthoFinder output from all 47 species
Solyc11g066370.2.1 ATLIG1, LIG1,... DNA replication DNA ligase (LIG1). DNA ligase (LIG1) 0.02 OrthoFinder output from all 47 species
Zm00001e004508_P002 ATLIG1, LIG1,... DNA replication DNA ligase (LIG1). DNA ligase (LIG1) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003910 DNA ligase (ATP) activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006281 DNA repair IEA Interproscan
BP GO:0006310 DNA recombination IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEP HCCA
MF GO:0004652 polynucleotide adenylyltransferase activity IEP HCCA
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP HCCA
MF GO:0005096 GTPase activator activity IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
MF GO:0010181 FMN binding IEP HCCA
MF GO:0015291 secondary active transmembrane transporter activity IEP HCCA
MF GO:0015293 symporter activity IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016846 carbon-sulfur lyase activity IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043631 RNA polyadenylation IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
MF GO:0070566 adenylyltransferase activity IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
InterPro domains Description Start Stop
IPR012310 DNA_ligase_ATP-dep_cent 379 583
IPR012308 DNA_ligase_ATP-dep_N 137 313
IPR012309 DNA_ligase_ATP-dep_C 608 719
No external refs found!