Aliases : ATLIG1, LIG1
Description : EC_6.5 ligase forming phosphoric ester bond & original description: CDS=79-2331
Gene families : OG0001904 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001904_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Sacu_v1.1_s0041.g012541 | |
Cluster | HCCA: Cluster_22 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Ceric.28G053000.1 | ATLIG1, LIG1,... | EC_6.5 ligase forming phosphoric ester bond & original... | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01031470001 | ATLIG1, LIG1 | DNA damage response.DNA repair mechanisms.base excision... | 0.02 | OrthoFinder output from all 47 species | |
Lfl_g09242 | ATLIG1, LIG1 | EC_6.5 ligase forming phosphoric ester bond & original... | 0.02 | OrthoFinder output from all 47 species | |
Msp_g15129 | ATLIG1, LIG1 | EC_6.5 ligase forming phosphoric ester bond & original... | 0.02 | OrthoFinder output from all 47 species | |
Solyc11g066370.2.1 | ATLIG1, LIG1,... | DNA replication DNA ligase (LIG1). DNA ligase (LIG1) | 0.02 | OrthoFinder output from all 47 species | |
Zm00001e004508_P002 | ATLIG1, LIG1,... | DNA replication DNA ligase (LIG1). DNA ligase (LIG1) | 0.03 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003677 | DNA binding | IEA | Interproscan |
MF | GO:0003910 | DNA ligase (ATP) activity | IEA | Interproscan |
MF | GO:0005524 | ATP binding | IEA | Interproscan |
BP | GO:0006281 | DNA repair | IEA | Interproscan |
BP | GO:0006310 | DNA recombination | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0004650 | polygalacturonase activity | IEP | HCCA |
MF | GO:0004652 | polynucleotide adenylyltransferase activity | IEP | HCCA |
MF | GO:0005085 | guanyl-nucleotide exchange factor activity | IEP | HCCA |
MF | GO:0005096 | GTPase activator activity | IEP | HCCA |
CC | GO:0005730 | nucleolus | IEP | HCCA |
BP | GO:0006364 | rRNA processing | IEP | HCCA |
MF | GO:0008047 | enzyme activator activity | IEP | HCCA |
MF | GO:0010181 | FMN binding | IEP | HCCA |
MF | GO:0015291 | secondary active transmembrane transporter activity | IEP | HCCA |
MF | GO:0015293 | symporter activity | IEP | HCCA |
BP | GO:0016072 | rRNA metabolic process | IEP | HCCA |
MF | GO:0016846 | carbon-sulfur lyase activity | IEP | HCCA |
MF | GO:0030234 | enzyme regulator activity | IEP | HCCA |
MF | GO:0030695 | GTPase regulator activity | IEP | HCCA |
CC | GO:0043228 | non-membrane-bounded organelle | IEP | HCCA |
CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | HCCA |
BP | GO:0043631 | RNA polyadenylation | IEP | HCCA |
MF | GO:0060589 | nucleoside-triphosphatase regulator activity | IEP | HCCA |
MF | GO:0070566 | adenylyltransferase activity | IEP | HCCA |
MF | GO:0098772 | molecular function regulator activity | IEP | HCCA |
MF | GO:0140677 | molecular function activator activity | IEP | HCCA |
No external refs found! |