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  5. Sacu_v1.1_s0040.g012304

Sacu_v1.1_s0040.g012304


Description : ARID-type transcription factor & original description: CDS=1-1431


Gene families : OG0002366 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002366_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0040.g012304

Target Alias Description ECC score Gene Family Method Actions
Aev_g13269 No alias ARID-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g09897 No alias ARID-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01013439001 No alias RNA biosynthesis.transcriptional activation.ARID... 0.03 OrthoFinder output from all 47 species
LOC_Os06g41730.1 LOC_Os06g41730 transcription factor (ARID) 0.02 OrthoFinder output from all 47 species
Len_g15073 No alias ARID-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Mp8g07310.1 No alias transcription factor (ARID) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP HCCA
CC GO:0000786 nucleosome IEP HCCA
BP GO:0002097 tRNA wobble base modification IEP HCCA
BP GO:0002098 tRNA wobble uridine modification IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0019786 Atg8-specific peptidase activity IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP HCCA
BP GO:0034227 tRNA thio-modification IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0042255 ribosome assembly IEP HCCA
BP GO:0042256 cytosolic ribosome assembly IEP HCCA
MF GO:0043021 ribonucleoprotein complex binding IEP HCCA
MF GO:0043022 ribosome binding IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
BP GO:0045048 protein insertion into ER membrane IEP HCCA
BP GO:0051205 protein insertion into membrane IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0070925 organelle assembly IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP HCCA
BP GO:0140694 non-membrane-bounded organelle assembly IEP HCCA
InterPro domains Description Start Stop
IPR002068 A-crystallin/Hsp20_dom 388 471
IPR001606 ARID_dom 124 219
No external refs found!