Sacu_v1.1_s0039.g012229


Description : not classified & original description: CDS=2-607


Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0039.g012229
Cluster HCCA: Cluster_57

Target Alias Description ECC score Gene Family Method Actions
Cba_g04967 AGL21 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.12G051800.1 GL19, AGL19,... MADS/AGL-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Dde_g50123 AGL3, SEP4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g07446 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Len_g20789 SHP2, AGL5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g08479 SOC1, AGL20, ATSOC1 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g18297 AGL21 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g19814 AGL10, CAL1, CAL MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g29613 STK, AGL11 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g04968 AGL7, AP1 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g11400 GL19, AGL19 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g11923 AGL21 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Smo437868 AGL29 RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
Solyc06g059970.4.1 PI, Solyc06g059970 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Tin_g20318 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
InterPro domains Description Start Stop
IPR002487 TF_Kbox 55 105
No external refs found!