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  5. Sacu_v1.1_s0038.g012041

Sacu_v1.1_s0038.g012041 (TIC20)


Aliases : TIC20

Description : component *(Tic20-I/IV) of inner envelope TIC-20 complex & original description: CDS=47-793


Gene families : OG0005319 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005319_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0038.g012041
Cluster HCCA: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
AT1G04940 TIC20 translocon at the inner envelope membrane of chloroplasts 20 0.03 OrthoFinder output from all 47 species
Adi_g050694 TIC20 component *(Tic20-I/IV) of inner envelope TIC-20 complex... 0.03 OrthoFinder output from all 47 species
Aev_g04496 TIC20 component *(Tic20-I/IV) of inner envelope TIC-20 complex... 0.1 OrthoFinder output from all 47 species
Ala_g00901 TIC20 component *(Tic20-I/IV) of inner envelope TIC-20 complex... 0.03 OrthoFinder output from all 47 species
Als_g04203 TIC20 component *(Tic20-I/IV) of inner envelope TIC-20 complex... 0.05 OrthoFinder output from all 47 species
Aspi01Gene07138.t1 TIC20, Aspi01Gene07138 component *(Tic20-I/IV) of inner envelope TIC-20 complex... 0.03 OrthoFinder output from all 47 species
Cba_g07866 TIC20 component *(Tic20-I/IV) of inner envelope TIC-20 complex... 0.03 OrthoFinder output from all 47 species
Ceric.01G050900.1 TIC20, Ceric.01G050900 component *(Tic20-I/IV) of inner envelope TIC-20 complex... 0.03 OrthoFinder output from all 47 species
Cre08.g379650 TIC20 Protein translocation.chloroplast.inner envelope TIC... 0.02 OrthoFinder output from all 47 species
MA_20216g0010 TIC20 component Tic20-I/IV of inner envelope TIC-20 complex 0.02 OrthoFinder output from all 47 species
Mp3g05820.1 TIC20 component Tic20-I/IV of inner envelope TIC-20 complex 0.03 OrthoFinder output from all 47 species
Nbi_g08221 TIC20 component *(Tic20-I/IV) of inner envelope TIC-20 complex... 0.05 OrthoFinder output from all 47 species
Solyc05g054720.3.1 TIC20, Solyc05g054720 component Tic20-I/IV of inner envelope TIC-20 complex 0.05 OrthoFinder output from all 47 species
Spa_g29705 TIC20 component *(Tic20-I/IV) of inner envelope TIC-20 complex... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008483 transaminase activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0030163 protein catabolic process IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR005691 Tic20 68 239
No external refs found!