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  5. Sacu_v1.1_s0038.g011923

Sacu_v1.1_s0038.g011923


Description : ribosome docking factor *(MDM38) & original description: CDS=168-2435


Gene families : OG0002125 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002125_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0038.g011923
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
Adi_g057751 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g18832 No alias ribosome docking factor *(MDM38) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g13565 No alias ribosome docking factor *(MDM38) & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0043022 ribosome binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006465 signal peptide processing IEP HCCA
BP GO:0007034 vacuolar transport IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0016485 protein processing IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR033122 LETM1-like_RBD 240 437
No external refs found!