Sacu_v1.1_s0037.g011867


Description : component *(Sec23) of Sec23/24 cargo adaptor subcomplex & original description: CDS=33-2348


Gene families : OG0001171 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001171_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0037.g011867

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001408.15 No alias Vesicle trafficking.Coat protein II (COPII) coatomer... 0.01 OrthoFinder output from all 47 species
Sam_g12240 No alias component *(Sec23) of Sec23/24 cargo adaptor subcomplex... 0.03 OrthoFinder output from all 47 species
Zm00001e008888_P001 Zm00001e008888 component Sec23 of Sec23/24 cargo adaptor subcomplex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
CC GO:0030127 COPII vesicle coat IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
InterPro domains Description Start Stop
IPR006900 Sec23/24_helical_dom 526 623
IPR007123 Gelsolin-like_dom 640 726
IPR012990 Sec23_24_beta_S 413 511
IPR006895 Znf_Sec23_Sec24 55 90
IPR006896 Sec23/24_trunk_dom 139 400
No external refs found!