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  5. Sacu_v1.1_s0035.g011471

Sacu_v1.1_s0035.g011471


Description : nuclear-encoded organellar RNA polymerase *(NEP) & original description: CDS=191-3529


Gene families : OG0002420 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002420_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0035.g011471
Cluster HCCA: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
Aob_g40349 No alias nuclear-encoded organellar RNA polymerase *(NEP) &... 0.02 OrthoFinder output from all 47 species
Aspi01Gene14809.t2 PDE319, SCA3,... nuclear-encoded organellar RNA polymerase *(NEP) &... 0.04 OrthoFinder output from all 47 species
Azfi_s0032.g024782 No alias nuclear-encoded organellar RNA polymerase *(NEP) &... 0.04 OrthoFinder output from all 47 species
Cba_g37255 No alias nuclear-encoded organellar RNA polymerase *(NEP) &... 0.03 OrthoFinder output from all 47 species
Cba_g72236 No alias nuclear-encoded organellar RNA polymerase *(NEP) &... 0.02 OrthoFinder output from all 47 species
Ceric.05G056000.1 Ceric.05G056000 nuclear-encoded organellar RNA polymerase *(NEP) &... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021493.49 PDE319, SCA3 RNA biosynthesis.organelle machineries.RNA polymerase... 0.02 OrthoFinder output from all 47 species
Dac_g06640 No alias nuclear-encoded organellar RNA polymerase *(NEP) &... 0.04 OrthoFinder output from all 47 species
Dde_g12005 No alias nuclear-encoded organellar RNA polymerase *(NEP) &... 0.03 OrthoFinder output from all 47 species
LOC_Os06g44230.1 PDE319, SCA3,... nuclear-encoded organellar RNA polymerase (NEP) 0.02 OrthoFinder output from all 47 species
Msp_g24039 No alias nuclear-encoded organellar RNA polymerase *(NEP) &... 0.03 OrthoFinder output from all 47 species
Ore_g19690 MGP3 nuclear-encoded organellar RNA polymerase *(NEP) &... 0.03 OrthoFinder output from all 47 species
Pir_g13046 No alias nuclear-encoded organellar RNA polymerase *(NEP) &... 0.04 OrthoFinder output from all 47 species
Sam_g16227 No alias nuclear-encoded organellar RNA polymerase *(NEP) &... 0.03 OrthoFinder output from all 47 species
Sam_g26719 No alias nuclear-encoded organellar RNA polymerase *(NEP) &... 0.03 OrthoFinder output from all 47 species
Sam_g51936 No alias nuclear-encoded organellar RNA polymerase *(NEP) &... 0.03 OrthoFinder output from all 47 species
Spa_g10286 No alias nuclear-encoded organellar RNA polymerase *(NEP) &... 0.04 OrthoFinder output from all 47 species
Spa_g19377 No alias nuclear-encoded organellar RNA polymerase *(NEP) &... 0.03 OrthoFinder output from all 47 species
Zm00001e035572_P001 MGP3, Zm00001e035572 nuclear-encoded organellar RNA polymerase (NEP) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0004014 adenosylmethionine decarboxylase activity IEP HCCA
CC GO:0005741 mitochondrial outer membrane IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006576 biogenic amine metabolic process IEP HCCA
BP GO:0006595 polyamine metabolic process IEP HCCA
BP GO:0006596 polyamine biosynthetic process IEP HCCA
BP GO:0006597 spermine biosynthetic process IEP HCCA
BP GO:0008215 spermine metabolic process IEP HCCA
BP GO:0008216 spermidine metabolic process IEP HCCA
BP GO:0008295 spermidine biosynthetic process IEP HCCA
BP GO:0009308 amine metabolic process IEP HCCA
BP GO:0009309 amine biosynthetic process IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
BP GO:0042401 biogenic amine biosynthetic process IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
InterPro domains Description Start Stop
IPR029262 RPOL_N 274 601
No external refs found!