Sacu_v1.1_s0034.g011168 (ATRABG3C, ATRAB7D, RABG3c)

Aliases : ATRABG3C, ATRAB7D, RABG3c

Description : G-class RAB GTPase & original description: CDS=38-799

Gene families : OG0000865 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000865_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sacu_v1.1_s0034.g011168

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00059p00072050	AtRABG3d,...	Vesicle trafficking.regulation of membrane tethering and...	0.01	OrthoFinder output from all 47 species
AT1G52280	AtRABG3d, RABG3d	RAB GTPase homolog G3D	0.02	OrthoFinder output from all 47 species
AT3G18820	ATRAB7B, RAB7B,...	RAB GTPase homolog G3F	0.04	OrthoFinder output from all 47 species
Adi_g021271	AtRABG3d, RABG3d	G-class RAB GTPase & original description: none	0.04	OrthoFinder output from all 47 species
Adi_g115862	AtRABG3d, RABG3d	G-class RAB GTPase & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g03102	ATRABG3C, ATRAB7D, RABG3c	G-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.20G031900.1	ATRAB7B, RAB7B,...	G-class RAB GTPase & original description:...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000754.29	ATRABG3C, ATRAB7D, RABG3c	Vesicle trafficking.regulation of membrane tethering and...	0.01	OrthoFinder output from all 47 species
Cre06.g311900	ATRAB7, RABG3E, ATRABG3E	Vesicle trafficking.regulation of membrane tethering and...	0.02	OrthoFinder output from all 47 species
Ehy_g07308	ATRABG3C, ATRAB7D, RABG3c	G-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
LOC_Os05g44050.1	ATRAB7B, RAB7B,...	G-class RAB GTPase	0.02	OrthoFinder output from all 47 species
Len_g11961	AtRABG3d, RABG3d	G-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g08054	AtRABG3d, RABG3d	G-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Mp8g13820.1	AtRABG3d, RABG3d	G-class RAB GTPase	0.03	OrthoFinder output from all 47 species
Ppi_g00597	AtRABG3d, RABG3d	G-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Solyc03g120750.3.1	AtRABG3d,...	G-class RAB GTPase	0.02	OrthoFinder output from all 47 species
Zm00001e028178_P003	ATRABG3B,...	G-class RAB GTPase	0.02	OrthoFinder output from all 47 species
Zm00001e032146_P002	ATRAB7B, RAB7B,...	G-class RAB GTPase	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0001534	radial spoke	IEP	HCCA
BP	GO:0003341	cilium movement	IEP	HCCA
MF	GO:0003712	transcription coregulator activity	IEP	HCCA
MF	GO:0004180	carboxypeptidase activity	IEP	HCCA
MF	GO:0004185	serine-type carboxypeptidase activity	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	HCCA
MF	GO:0008238	exopeptidase activity	IEP	HCCA
BP	GO:0010257	NADH dehydrogenase complex assembly	IEP	HCCA
MF	GO:0015095	magnesium ion transmembrane transporter activity	IEP	HCCA
BP	GO:0015693	magnesium ion transport	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
CC	GO:0016592	mediator complex	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
BP	GO:0030030	cell projection organization	IEP	HCCA
BP	GO:0030031	cell projection assembly	IEP	HCCA
BP	GO:0032981	mitochondrial respiratory chain complex I assembly	IEP	HCCA
BP	GO:0033108	mitochondrial respiratory chain complex assembly	IEP	HCCA
BP	GO:0044782	cilium organization	IEP	HCCA
BP	GO:0060271	cilium assembly	IEP	HCCA
BP	GO:0060294	cilium movement involved in cell motility	IEP	HCCA
MF	GO:0070008	serine-type exopeptidase activity	IEP	HCCA
BP	GO:0070925	organelle assembly	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:0120031	plasma membrane bounded cell projection assembly	IEP	HCCA
BP	GO:0120036	plasma membrane bounded cell projection organization	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001806	Small_GTPase	87	236
IPR002885	Pentatricopeptide_repeat	416	445
IPR002885	Pentatricopeptide_repeat	277	306
IPR002885	Pentatricopeptide_repeat	451	480
IPR002885	Pentatricopeptide_repeat	134	160
IPR002885	Pentatricopeptide_repeat	194	250

External Links

No external refs found!

Sacu_v1.1_s0034.g011168 (ATRABG3C, ATRAB7D, RABG3c)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation