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  5. Sacu_v1.1_s0034.g011164

Sacu_v1.1_s0034.g011164


Description : E3 ubiquitin ligase & original description: CDS=49-897


Gene families : OG0001516 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001516_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0034.g011164
Cluster HCCA: Cluster_35

Target Alias Description ECC score Gene Family Method Actions
Azfi_s0052.g031495 No alias E3 ubiquitin ligase & original description: CDS=54-1316 0.04 OrthoFinder output from all 47 species
Cre12.g517800 No alias No description available 0.01 OrthoFinder output from all 47 species
Ehy_g18269 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Len_g24683 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g36932 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Solyc04g054330.3.1 Solyc04g054330 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Spa_g05321 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e021209_P002 Zm00001e021209 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005747 mitochondrial respiratory chain complex I IEP HCCA
MF GO:0015291 secondary active transmembrane transporter activity IEP HCCA
MF GO:0015297 antiporter activity IEP HCCA
MF GO:0015299 obsolete solute:proton antiporter activity IEP HCCA
MF GO:0016854 racemase and epimerase activity IEP HCCA
MF GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives IEP HCCA
BP GO:0022900 electron transport chain IEP HCCA
CC GO:0030964 NADH dehydrogenase complex IEP HCCA
MF GO:0042910 xenobiotic transmembrane transporter activity IEP HCCA
CC GO:0045271 respiratory chain complex I IEP HCCA
CC GO:0098798 mitochondrial protein-containing complex IEP HCCA
CC GO:0098800 inner mitochondrial membrane protein complex IEP HCCA
CC GO:0098803 respiratory chain complex IEP HCCA
CC GO:1902495 transmembrane transporter complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
CC GO:1990351 transporter complex IEP HCCA
InterPro domains Description Start Stop
IPR011016 Znf_RING-CH 104 149
No external refs found!