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  5. Sacu_v1.1_s0032.g010735

Sacu_v1.1_s0032.g010735


Description : not classified & original description: CDS=73-600


Gene families : OG0005454 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005454_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0032.g010735
Cluster HCCA: Cluster_35

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00271130 evm_27.TU.AmTr_v1... PITH domain-containing protein At3g04780 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Adi_g021260 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g021261 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g01504 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os03g58130.1 LOC_Os03g58130 PITH domain-containing protein At3g04780 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Mp6g04670.1 No alias PITH domain-containing protein At3g04780 OS=Arabidopsis... 0.01 OrthoFinder output from all 47 species
Msp_g11568 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g097450.3.1 Solyc01g097450 PITH domain-containing protein At3g04780 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Spa_g09307 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003855 3-dehydroquinate dehydratase activity IEP HCCA
MF GO:0004143 diacylglycerol kinase activity IEP HCCA
MF GO:0004764 shikimate 3-dehydrogenase (NADP+) activity IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
BP GO:0007186 G protein-coupled receptor signaling pathway IEP HCCA
BP GO:0007205 protein kinase C-activating G protein-coupled receptor signaling pathway IEP HCCA
BP GO:0010257 NADH dehydrogenase complex assembly IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
CC GO:0017053 transcription repressor complex IEP HCCA
BP GO:0032981 mitochondrial respiratory chain complex I assembly IEP HCCA
BP GO:0033108 mitochondrial respiratory chain complex assembly IEP HCCA
InterPro domains Description Start Stop
IPR010400 PITH_dom 13 156
No external refs found!