1. Home
  2. Species
  3. Salvinia cucullata
  4. Sequence
  5. Sacu_v1.1_s0029.g010074

Sacu_v1.1_s0029.g010074


Description : not classified & original description: CDS=287-2170


Gene families : OG0000627 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000627_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0029.g010074

Target Alias Description ECC score Gene Family Method Actions
AT3G63450 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.04 OrthoFinder output from all 47 species
AT5G12440 No alias CCCH-type zinc fingerfamily protein with RNA-binding domain 0.04 OrthoFinder output from all 47 species
Adi_g081485 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g098580 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g112963 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g42057 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g58788 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene71443.t1 Aspi01Gene71443 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01037782001 No alias RNA biosynthesis.transcriptional activation.C3H zinc... 0.04 OrthoFinder output from all 47 species
LOC_Os03g21140.1 LOC_Os03g21140 C3H zinc finger transcription factor 0.04 OrthoFinder output from all 47 species
LOC_Os07g48410.1 LOC_Os07g48410 C3H zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
LOC_Os11g03220.1 LOC_Os11g03220 C3H zinc finger transcription factor 0.02 OrthoFinder output from all 47 species
Lfl_g40605 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g07168 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g30445 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g29161 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e001546_P001 Zm00001e001546 C3H zinc finger transcription factor 0.02 OrthoFinder output from all 47 species
Zm00001e020869_P004 Zm00001e020869 C3H zinc finger transcription factor 0.02 OrthoFinder output from all 47 species
Zm00001e024022_P001 Zm00001e024022 C3H zinc finger transcription factor 0.06 OrthoFinder output from all 47 species
Zm00001e035876_P001 Zm00001e035876 C3H zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
Zm00001e039250_P004 Zm00001e039250 C3H zinc finger transcription factor 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0046872 metal ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0007034 vacuolar transport IEP HCCA
MF GO:0015291 secondary active transmembrane transporter activity IEP HCCA
MF GO:0015297 antiporter activity IEP HCCA
MF GO:0042910 xenobiotic transmembrane transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 373 422
IPR000571 Znf_CCCH 195 217
IPR025605 OST-HTH/LOTUS_dom 260 337
No external refs found!