Sacu_v1.1_s0025.g009354

Description : component *(RINGLET/RLT) of ISWI chromatin remodeling complex & original description: CDS=238-5340

Gene families : OG0001590 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001590_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sacu_v1.1_s0025.g009354

Target	Alias	Description	ECC score	Gene Family Method
AT5G44180	No alias	Homeodomain-like transcriptional regulator	0.03	OrthoFinder output from all 47 species
Adi_g012033	HB-1	component *(RINGLET/RLT) of ISWI chromatin remodeling...	0.03	OrthoFinder output from all 47 species
Als_g14029	No alias	component *(RINGLET/RLT) of ISWI chromatin remodeling...	0.04	OrthoFinder output from all 47 species
Aspi01Gene48323.t1	HB-1, Aspi01Gene48323	component *(RINGLET/RLT) of ISWI chromatin remodeling...	0.03	OrthoFinder output from all 47 species
Ceric.16G048200.1	HB-1, Ceric.16G048200	component *(RINGLET/RLT) of ISWI chromatin remodeling...	0.03	OrthoFinder output from all 47 species
Ehy_g16445	No alias	component *(RINGLET/RLT) of ISWI chromatin remodeling...	0.04	OrthoFinder output from all 47 species
Ehy_g30736	No alias	component *(RINGLET/RLT) of ISWI chromatin remodeling...	0.05	OrthoFinder output from all 47 species
GSVIVT01020605001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.04	OrthoFinder output from all 47 species
GSVIVT01021113001	HB-1	RNA biosynthesis.transcriptional activation.HB...	0.03	OrthoFinder output from all 47 species
GSVIVT01036776001	No alias	Homeobox-DDT domain protein RLT3 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
LOC_Os07g42750.1	LOC_Os07g42750	Homeobox-DDT domain protein RLT3 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
Lfl_g05044	No alias	component *(RINGLET/RLT) of ISWI chromatin remodeling...	0.03	OrthoFinder output from all 47 species
Lfl_g10310	No alias	component *(RINGLET/RLT) of ISWI chromatin remodeling...	0.04	OrthoFinder output from all 47 species
MA_10432531g0020	No alias	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
MA_2434g0010	No alias	HOX-like transcription factor	0.03	OrthoFinder output from all 47 species
Mp1g04480.1	No alias	HOX-like transcription factor	0.04	OrthoFinder output from all 47 species
Msp_g47810	HB-1	component *(RINGLET/RLT) of ISWI chromatin remodeling...	0.03	OrthoFinder output from all 47 species
Ore_g29882	No alias	component *(RINGLET/RLT) of ISWI chromatin remodeling...	0.03	OrthoFinder output from all 47 species
Sam_g29222	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g39581	No alias	component *(RINGLET/RLT) of ISWI chromatin remodeling...	0.03	OrthoFinder output from all 47 species
Solyc02g077660.3.1	HB-1, Solyc02g077660	HOX-like transcription factor	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004176	ATP-dependent peptidase activity	IEP	HCCA
MF	GO:0004222	metalloendopeptidase activity	IEP	HCCA
BP	GO:0006486	protein glycosylation	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
MF	GO:0030246	carbohydrate binding	IEP	HCCA
BP	GO:0043413	macromolecule glycosylation	IEP	HCCA
BP	GO:0070085	glycosylation	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:0140299	small molecule sensor activity	IEP	HCCA
MF	GO:0140612	DNA damage sensor activity	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEP	HCCA
MF	GO:0140664	ATP-dependent DNA damage sensor activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR018501	DDT_dom	477	531
IPR007759	Asxl_HARE-HTH	655	723
IPR028941	WHIM2_dom	1029	1101
IPR028942	WHIM1_dom	872	906

External Links

No external refs found!

Sacu_v1.1_s0025.g009354

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation