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  5. Sacu_v1.1_s0022.g008621

Sacu_v1.1_s0022.g008621


Description : stress granule assembly factor *(UBP1) & original description: CDS=172-1563


Gene families : OG0002014 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002014_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0022.g008621

Target Alias Description ECC score Gene Family Method Actions
Aop_g05119 UBP1B stress granule assembly factor *(UBP1) & original... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001181.19 UBP1B Oligouridylate-binding protein 1 OS=Nicotiana plumbaginifolia 0.01 OrthoFinder output from all 47 species
MA_10429328g0010 UBP1B mRNA-binding regulatory factor (UBP1) 0.02 OrthoFinder output from all 47 species
Mp1g10220.1 UBP1B mRNA-binding regulatory factor (UBP1) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP HCCA
BP GO:0000097 sulfur amino acid biosynthetic process IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0005516 calmodulin binding IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
BP GO:0006534 cysteine metabolic process IEP HCCA
BP GO:0006535 cysteine biosynthetic process from serine IEP HCCA
BP GO:0006563 L-serine metabolic process IEP HCCA
BP GO:0006643 membrane lipid metabolic process IEP HCCA
BP GO:0006665 sphingolipid metabolic process IEP HCCA
BP GO:0006672 ceramide metabolic process IEP HCCA
MF GO:0008374 O-acyltransferase activity IEP HCCA
MF GO:0009001 serine O-acetyltransferase activity IEP HCCA
BP GO:0009069 serine family amino acid metabolic process IEP HCCA
BP GO:0009070 serine family amino acid biosynthetic process IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016412 serine O-acyltransferase activity IEP HCCA
MF GO:0016413 O-acetyltransferase activity IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP HCCA
BP GO:0019344 cysteine biosynthetic process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
BP GO:0044272 sulfur compound biosynthetic process IEP HCCA
MF GO:0070403 NAD+ binding IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 145 211
IPR000504 RRM_dom 230 300
IPR000504 RRM_dom 358 423
No external refs found!