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  5. Sacu_v1.1_s0021.g008262

Sacu_v1.1_s0021.g008262


Description : not classified & original description: CDS=42-2948


Gene families : OG0015012 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0015012_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0021.g008262

Target Alias Description ECC score Gene Family Method Actions
Aspi01Gene14564.t1 Aspi01Gene14564 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.23G044400.1 Ceric.23G044400 not classified & original description: pacid=50610416... 0.04 OrthoFinder output from all 47 species
Len_g02427 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g06692 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g09076 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g13513 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004057 arginyltransferase activity IEP HCCA
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0016598 protein arginylation IEP HCCA
MF GO:0016755 aminoacyltransferase activity IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
MF GO:0140678 molecular function inhibitor activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 102 128
IPR002885 Pentatricopeptide_repeat 528 557
IPR002885 Pentatricopeptide_repeat 72 98
IPR002885 Pentatricopeptide_repeat 728 757
IPR002885 Pentatricopeptide_repeat 699 721
IPR002885 Pentatricopeptide_repeat 599 619
IPR002885 Pentatricopeptide_repeat 863 890
IPR002885 Pentatricopeptide_repeat 801 820
IPR002885 Pentatricopeptide_repeat 239 284
IPR002885 Pentatricopeptide_repeat 340 377
IPR002885 Pentatricopeptide_repeat 624 671
No external refs found!