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  5. Sacu_v1.1_s0020.g008079

Sacu_v1.1_s0020.g008079


Description : not classified & original description: CDS=527-2194


Gene families : OG0000185 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000185_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0020.g008079

Target Alias Description ECC score Gene Family Method Actions
AT5G53060 No alias RNA-binding KH domain-containing protein 0.02 OrthoFinder output from all 47 species
AT5G64390 HEN4 RNA-binding KH domain-containing protein 0.02 OrthoFinder output from all 47 species
Adi_g011502 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g016415 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g019262 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g022420 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g040691 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g054729 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g058992 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g074054 HEN4 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g100933 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g106357 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g108733 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g115532 HEN4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g01331 No alias regulatory protein *(RCF3) of HYL1-phosphorylation &... 0.02 OrthoFinder output from all 47 species
Aev_g08032 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g19267 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g21439 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g25451 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g06633 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g17642 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.17G032000.1 Ceric.17G032000 regulatory protein *(RCF3) of HYL1-phosphorylation &... 0.03 OrthoFinder output from all 47 species
Ceric.24G065400.1 Ceric.24G065400 not classified & original description: pacid=50629874... 0.02 OrthoFinder output from all 47 species
Ceric.25G027100.1 Ceric.25G027100 not classified & original description: pacid=50594480... 0.03 OrthoFinder output from all 47 species
Ceric.32G028300.1 Ceric.32G028300 not classified & original description: pacid=50598029... 0.03 OrthoFinder output from all 47 species
Dac_g11897 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g16018 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g20278 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g03944 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g10791 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g03943 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g07829 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_18830 No alias RNA-binding KH domain-containing protein RCF3... 0.02 OrthoFinder output from all 47 species
LOC_Os01g13470.1 LOC_Os01g13470 RNA-binding KH domain-containing protein RCF3... 0.02 OrthoFinder output from all 47 species
LOC_Os08g10030.1 LOC_Os08g10030 KH domain-containing protein At4g18375 OS=Arabidopsis... 0.01 OrthoFinder output from all 47 species
LOC_Os09g32300.1 LOC_Os09g32300 KH domain-containing protein HEN4 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Len_g07805 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g19668 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g04773 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Mp3g04880.1 No alias RNA-binding KH domain-containing protein RCF3... 0.02 OrthoFinder output from all 47 species
Msp_g10485 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Msp_g12132 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g03216 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g06772 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g10012 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g15528 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g21684 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g25271 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g10935 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g08472 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g13844 No alias regulatory protein *(RCF3) of HYL1-phosphorylation &... 0.03 OrthoFinder output from all 47 species
Sam_g15786 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g35222 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc03g034200.3.1 Solyc03g034200 RNA-binding KH domain-containing protein RCF3... 0.04 OrthoFinder output from all 47 species
Solyc03g082980.3.1 Solyc03g082980 RNA-binding KH domain-containing protein RCF3... 0.02 OrthoFinder output from all 47 species
Solyc08g048500.3.1 Solyc08g048500 KH domain-containing protein At4g18375 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Spa_g22547 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g53383 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g02804 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g09067 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g36753 PEP not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e030716_P002 Zm00001e030716 RNA-binding KH domain-containing protein RCF3... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP HCCA
BP GO:0002098 tRNA wobble uridine modification IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006476 protein deacetylation IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016575 histone deacetylation IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
CC GO:0031011 Ino80 complex IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0033588 elongator holoenzyme complex IEP HCCA
CC GO:0035145 exon-exon junction complex IEP HCCA
BP GO:0035601 protein deacylation IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0070603 SWI/SNF superfamily-type complex IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0097346 INO80-type complex IEP HCCA
BP GO:0098732 macromolecule deacylation IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1904949 ATPase complex IEP HCCA
InterPro domains Description Start Stop
IPR004088 KH_dom_type_1 46 113
IPR004088 KH_dom_type_1 135 203
IPR004088 KH_dom_type_1 299 346
IPR004088 KH_dom_type_1 385 453
No external refs found!