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  5. Sacu_v1.1_s0020.g008068

Sacu_v1.1_s0020.g008068


Description : E3 ubiquitin ligase *(SINA) & original description: CDS=51-977


Gene families : OG0000462 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000462_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0020.g008068
Cluster HCCA: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00116p00101320 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
AT5G37930 No alias Protein with RING/U-box and TRAF-like domains 0.04 OrthoFinder output from all 47 species
Adi_g010007 No alias E3 ubiquitin ligase *(SINA) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g016460 SINAT2 E3 ubiquitin ligase *(SINA) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g07852 SINAT2 E3 ubiquitin ligase *(SINA) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01000648001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.01 OrthoFinder output from all 47 species
Pir_g02169 No alias E3 ubiquitin ligase *(SINA) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc06g051980.4.1 Solyc06g051980 SINA-class E3 ligase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm IEA Interproscan
BP GO:0006511 ubiquitin-dependent protein catabolic process IEA Interproscan
BP GO:0007275 multicellular organism development IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003997 acyl-CoA oxidase activity IEP HCCA
CC GO:0005777 peroxisome IEP HCCA
BP GO:0006635 fatty acid beta-oxidation IEP HCCA
BP GO:0007034 vacuolar transport IEP HCCA
BP GO:0009062 fatty acid catabolic process IEP HCCA
BP GO:0016042 lipid catabolic process IEP HCCA
BP GO:0016054 organic acid catabolic process IEP HCCA
BP GO:0016197 endosomal transport IEP HCCA
BP GO:0016482 cytosolic transport IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP HCCA
BP GO:0019395 fatty acid oxidation IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
BP GO:0030258 lipid modification IEP HCCA
CC GO:0030906 retromer, cargo-selective complex IEP HCCA
BP GO:0034440 lipid oxidation IEP HCCA
BP GO:0042147 retrograde transport, endosome to Golgi IEP HCCA
CC GO:0042579 microbody IEP HCCA
BP GO:0043248 proteasome assembly IEP HCCA
BP GO:0044242 cellular lipid catabolic process IEP HCCA
BP GO:0044282 small molecule catabolic process IEP HCCA
BP GO:0046395 carboxylic acid catabolic process IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0072329 monocarboxylic acid catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR018121 7-in-absentia-prot_TRAF-dom 102 301
No external refs found!