Sacu_v1.1_s0018.g007424

Description : nMAT1/2 type-I mitochondrial RNA splicing factor & original description: CDS=1-2079

Gene families : OG0003627 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003627_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sacu_v1.1_s0018.g007424

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00133420	evm_27.TU.AmTr_v1...	RNA processing.organelle machineries.RNA...	0.02	OrthoFinder output from all 47 species
AMTR_s00002p00133480	evm_27.TU.AmTr_v1...	RNA processing.organelle machineries.RNA...	0.07	OrthoFinder output from all 47 species
AMTR_s00047p00213160	evm_27.TU.AmTr_v1...	RNA processing.organelle machineries.RNA...	0.03	OrthoFinder output from all 47 species
AMTR_s00096p00172010	evm_27.TU.AmTr_v1...	RNA processing.organelle machineries.RNA...	0.03	OrthoFinder output from all 47 species
AT1G30010	No alias	Intron maturase, type II family protein	0.03	OrthoFinder output from all 47 species
Adi_g021888	No alias	nMAT1/2 type-I mitochondrial RNA splicing factor &...	0.04	OrthoFinder output from all 47 species
Als_g01930	No alias	nMAT1/2 type-I mitochondrial RNA splicing factor &...	0.04	OrthoFinder output from all 47 species
Als_g06394	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g09829	No alias	nMAT1/2 type-I mitochondrial RNA splicing factor &...	0.04	OrthoFinder output from all 47 species
Cba_g20844	No alias	nMAT1/2 type-I mitochondrial RNA splicing factor &...	0.03	OrthoFinder output from all 47 species
Cba_g37092	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g78363	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ceric.09G034500.1	Ceric.09G034500	not classified & original description: pacid=50588493...	0.05	OrthoFinder output from all 47 species
Dcu_g03916	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g07740	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g01601	No alias	nMAT1/2 type-I mitochondrial RNA splicing factor &...	0.02	OrthoFinder output from all 47 species
Gb_04055	No alias	nMAT1/2 type-I mitochondrial RNA splicing factor	0.06	OrthoFinder output from all 47 species
Gb_27973	No alias	nMAT1/2 type-I mitochondrial RNA splicing factor	0.05	OrthoFinder output from all 47 species
LOC_Os10g41790.1	LOC_Os10g41790	nMAT1/2 type-I mitochondrial RNA splicing factor	0.03	OrthoFinder output from all 47 species
Len_g09777	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g24502	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Msp_g39085	No alias	nMAT1/2 type-I mitochondrial RNA splicing factor &...	0.04	OrthoFinder output from all 47 species
Ppi_g05248	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Solyc08g077385.1.1	Solyc08g077385	nMAT1/2 type-I mitochondrial RNA splicing factor	0.02	OrthoFinder output from all 47 species
Tin_g13211	No alias	nMAT1/2 type-I mitochondrial RNA splicing factor &...	0.04	OrthoFinder output from all 47 species
Tin_g13529	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e000640_P001	Zm00001e000640	nMAT1/2 type-I mitochondrial RNA splicing factor	0.05	OrthoFinder output from all 47 species
Zm00001e011594_P001	Zm00001e011594	nMAT1/2 type-I mitochondrial RNA splicing factor	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005759	mitochondrial matrix	IEP	HCCA
CC	GO:0031974	membrane-enclosed lumen	IEP	HCCA
CC	GO:0043233	organelle lumen	IEP	HCCA
CC	GO:0070013	intracellular organelle lumen	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR024937	Domain_X	476	562

External Links

No external refs found!

Sacu_v1.1_s0018.g007424

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation