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  5. Sacu_v1.1_s0017.g007317

Sacu_v1.1_s0017.g007317


Description : scaffold protein of amylose biosynthesis *(PTST1) & original description: CDS=6-695


Gene families : OG0005315 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005315_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0017.g007317

Target Alias Description ECC score Gene Family Method Actions
AT5G39790 No alias 5'-AMP-activated protein kinase-related 0.02 OrthoFinder output from all 47 species
Pir_g62002 No alias scaffold protein of amylose biosynthesis *(PTST1) &... 0.03 OrthoFinder output from all 47 species
Sam_g24203 No alias scaffold protein of amylose biosynthesis *(PTST1) &... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP HCCA
MF GO:0000287 magnesium ion binding IEP HCCA
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004427 inorganic diphosphate phosphatase activity IEP HCCA
MF GO:0004602 glutathione peroxidase activity IEP HCCA
MF GO:0005381 iron ion transmembrane transporter activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006826 iron ion transport IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0034755 iron ion transmembrane transport IEP HCCA
MF GO:0046915 transition metal ion transmembrane transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR032640 AMPK1_CBM 150 228
No external refs found!