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  5. Ehy_g06197

Ehy_g06197 (ELF8, VIP6)


Aliases : ELF8, VIP6

Description : component *(VIP6/CTR9) of PAF1C transcription initiation and elongation complex & original description: none


Gene families : OG0004869 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004869_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ehy_g06197
Cluster HCCA: Cluster_79

Target Alias Description ECC score Gene Family Method Actions
Aev_g05510 ELF8, VIP6 component *(VIP6/CTR9) of PAF1C transcription initiation... 0.03 OrthoFinder output from all 47 species
Als_g28871 ELF8, VIP6 component *(VIP6/CTR9) of PAF1C transcription initiation... 0.02 OrthoFinder output from all 47 species
Aop_g37890 ELF8, VIP6 component *(VIP6/CTR9) of PAF1C transcription initiation... 0.03 OrthoFinder output from all 47 species
Aspi01Gene34045.t1 ELF8, VIP6,... component *(VIP6/CTR9) of PAF1C transcription initiation... 0.03 OrthoFinder output from all 47 species
Ceric.21G032800.1 ELF8, VIP6,... not classified & original description: pacid=50603729... 0.03 OrthoFinder output from all 47 species
Dde_g05956 ELF8, VIP6 component *(VIP6/CTR9) of PAF1C transcription initiation... 0.03 OrthoFinder output from all 47 species
LOC_Os07g29360.1 ELF8, VIP6,... component VIP6/CTR9 of PAF1C transcription initiation... 0.05 OrthoFinder output from all 47 species
Lfl_g02407 ELF8, VIP6 component *(VIP6/CTR9) of PAF1C transcription initiation... 0.03 OrthoFinder output from all 47 species
Ppi_g48264 ELF8, VIP6 component *(VIP6/CTR9) of PAF1C transcription initiation... 0.03 OrthoFinder output from all 47 species
Sam_g19463 No alias component *(VIP6/CTR9) of PAF1C transcription initiation... 0.03 OrthoFinder output from all 47 species
Smo149863 ELF8, VIP6 RNA biosynthesis.RNA polymerase II-dependent... 0.03 OrthoFinder output from all 47 species
Solyc07g041510.3.1 ELF8, VIP6,... component VIP6/CTR9 of PAF1C transcription initiation... 0.07 OrthoFinder output from all 47 species
Zm00001e007203_P003 ELF8, VIP6,... component VIP6/CTR9 of PAF1C transcription initiation... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004743 pyruvate kinase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0030955 potassium ion binding IEP HCCA
MF GO:0031420 alkali metal ion binding IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
InterPro domains Description Start Stop
IPR019734 TPR_repeat 305 332
IPR019734 TPR_repeat 714 741
IPR019734 TPR_repeat 449 475
No external refs found!