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  5. Sacu_v1.1_s0017.g007136

Sacu_v1.1_s0017.g007136


Description : histone demethylase *(KDM3) & original description: CDS=210-2957


Gene families : OG0000328 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000328_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0017.g007136

Target Alias Description ECC score Gene Family Method Actions
Adi_g009709 No alias histone demethylase *(KDM3) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g010141 No alias histone demethylase *(KDM3) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g113341 No alias histone demethylase *(KDM3) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.21G018000.1 Ceric.21G018000 histone demethylase *(KDM3) & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g16289 No alias histone demethylase *(KDM3) & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os03g22540.1 LOC_Os03g22540 histone demethylase (KDM3). transcription factor (JUMONJI) 0.02 OrthoFinder output from all 47 species
Zm00001e010541_P001 Zm00001e010541 histone demethylase (KDM3) 0.03 OrthoFinder output from all 47 species
Zm00001e038213_P003 Zm00001e038213 histone demethylase (KDM3). transcription factor (JUMONJI) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0007030 Golgi organization IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0018024 histone lysine N-methyltransferase activity IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
InterPro domains Description Start Stop
IPR014977 WRC_dom 49 86
IPR003347 JmjC_dom 739 835
No external refs found!