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  5. Sacu_v1.1_s0017.g007086

Sacu_v1.1_s0017.g007086


Description : component *(RPP1) of large ribosomal-subunit (LSU) proteome & original description: CDS=177-515


Gene families : OG0000349 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000349_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0017.g007086

Target Alias Description ECC score Gene Family Method Actions
AT1G01100 No alias 60S acidic ribosomal protein family 0.05 OrthoFinder output from all 47 species
AT5G47700 No alias 60S acidic ribosomal protein family 0.03 OrthoFinder output from all 47 species
Adi_g041465 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Adi_g041466 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Aop_g10155 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Aop_g46228 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000342.4 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.01 OrthoFinder output from all 47 species
Dcu_g11086 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Gb_21696 No alias component RPP1 of LSU proteome component 0.03 OrthoFinder output from all 47 species
LOC_Os08g02340.1 LOC_Os08g02340 component RPP1 of LSU proteome component 0.04 OrthoFinder output from all 47 species
Len_g00084 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Pp3c1_36220V3.1 Pp3c1_36220 60S acidic ribosomal protein family 0.02 OrthoFinder output from all 47 species
Pp3c8_22380V3.1 Pp3c8_22380 60S acidic ribosomal protein family 0.01 OrthoFinder output from all 47 species
Sam_g44445 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Tin_g00286 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Zm00001e029197_P001 Zm00001e029197 component RPP1 of LSU proteome component 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!