Sacu_v1.1_s0016.g006964


Description : Trihelix-type transcription factor & original description: CDS=389-3193


Gene families : OG0000556 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000556_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0016.g006964

Target Alias Description ECC score Gene Family Method Actions
Aev_g06719 No alias Trihelix-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g08051 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g10578 AT-GTL1, GTL1, AT-GTL2 Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18257 AT-GT2, GT2 Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g25951 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g57836 No alias Trihelix-type transcription factor & original description: none 0.07 OrthoFinder output from all 47 species
Aop_g22030 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene07378.t2 AT-GT2, GT2,... Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene27191.t1 Aspi01Gene27191 Trihelix-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene41238.t1 Aspi01Gene41238 Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0531.g075823 AT-GT2, GT2 Trihelix-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Cba_g72625 No alias Trihelix-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g03068 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g08613 AT-GT2, GT2 Trihelix-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01035465001 No alias RNA biosynthesis.transcriptional activation.Trihelix... 0.03 OrthoFinder output from all 47 species
Gb_32610 No alias transcription factor (Trihelix) 0.03 OrthoFinder output from all 47 species
Len_g19264 No alias Trihelix-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
MA_10427500g0030 No alias Trihelix transcription factor GTL1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_47951g0010 No alias transcription factor (Trihelix) 0.03 OrthoFinder output from all 47 species
Msp_g06014 AT-GT2, GT2 Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g11220 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g42672 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0147.g023173 No alias Trihelix-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0157.g023745 No alias Trihelix-type transcription factor & original... 0.06 OrthoFinder output from all 47 species
Spa_g13282 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g51431 No alias Trihelix-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Zm00001e000092_P003 AT-GTL1, GTL1,... transcription factor (Trihelix) 0.02 OrthoFinder output from all 47 species
Zm00001e007383_P001 Zm00001e007383 transcription factor (Trihelix) 0.03 OrthoFinder output from all 47 species
Zm00001e015271_P001 AT-GT2, GT2,... transcription factor (Trihelix) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0015276 ligand-gated monoatomic ion channel activity IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0022834 ligand-gated channel activity IEP HCCA
MF GO:0022836 gated channel activity IEP HCCA
MF GO:0022839 monoatomic ion gated channel activity IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
MF GO:0051213 dioxygenase activity IEP HCCA
InterPro domains Description Start Stop
IPR044822 Myb_DNA-bind_4 253 314
IPR044822 Myb_DNA-bind_4 599 686
No external refs found!