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  5. Sacu_v1.1_s0016.g006962

Sacu_v1.1_s0016.g006962


Description : translation initiation factor *(IF-2) & original description: CDS=1-2451


Gene families : OG0001742 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001742_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0016.g006962
Cluster HCCA: Cluster_48

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00092p00096920 FUG1,... Protein biosynthesis.organelle translation... 0.03 OrthoFinder output from all 47 species
Adi_g014194 FUG1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g14191 FUG1 translation initiation factor *(IF-2) & original... 0.03 OrthoFinder output from all 47 species
Cba_g31672 FUG1 translation initiation factor *(IF-2) & original... 0.02 OrthoFinder output from all 47 species
Dcu_g09850 No alias translation initiation factor *(IF-2) & original... 0.03 OrthoFinder output from all 47 species
Ehy_g13904 No alias translation initiation factor *(IF-2) & original... 0.02 OrthoFinder output from all 47 species
MA_27343g0010 No alias IF-2 translation initiation factor 0.02 OrthoFinder output from all 47 species
Pir_g03114 FUG1 translation initiation factor *(IF-2) & original... 0.03 OrthoFinder output from all 47 species
Pir_g13551 No alias translation initiation factor *(IF-2) & original... 0.03 OrthoFinder output from all 47 species
Ppi_g09075 FUG1 translation initiation factor *(IF-2) & original... 0.03 OrthoFinder output from all 47 species
Ppi_g29435 No alias translation initiation factor *(IF-2) & original... 0.02 OrthoFinder output from all 47 species
Smo133209 FUG1 Translation initiation factor IF-2, chloroplastic... 0.03 OrthoFinder output from all 47 species
Smo98506 No alias Protein biosynthesis.organelle translation... 0.02 OrthoFinder output from all 47 species
Solyc08g081900.4.1 Solyc08g081900 IF-2 translation initiation factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000795 T_Tr_GTP-bd_dom 279 435
IPR023115 TIF_IF2_dom3 575 686
No external refs found!