Sacu_v1.1_s0014.g006034

Description : component *(uS12) of small ribosomal-subunit (SSU) proteome & original description: CDS=130-558

Gene families : OG0002074 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002074_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sacu_v1.1_s0014.g006034

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00058p00204160	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.02	OrthoFinder output from all 47 species
AT5G02960	No alias	Ribosomal protein S12/S23 family protein	0.05	OrthoFinder output from all 47 species
Ceric.19G078000.1	Ceric.19G078000	component *(uS12) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001264.27	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.02	OrthoFinder output from all 47 species
Cre12.g504200	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.04	OrthoFinder output from all 47 species
GSVIVT01025120001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	OrthoFinder output from all 47 species
Gb_36570	No alias	component RPS23 of SSU proteome	0.02	OrthoFinder output from all 47 species
LOC_Os01g61814.1	LOC_Os01g61814	component RPS23 of SSU proteome	0.04	OrthoFinder output from all 47 species
LOC_Os03g60400.1	LOC_Os03g60400	component RPS23 of SSU proteome	0.05	OrthoFinder output from all 47 species
MA_10436470g0020	No alias	component RPS23 of SSU proteome	0.02	OrthoFinder output from all 47 species
MA_19871g0020	No alias	component RPS23 of SSU proteome	0.03	OrthoFinder output from all 47 species
MA_9043057g0010	No alias	component RPS23 of SSU proteome	0.03	OrthoFinder output from all 47 species
Mp2g08680.1	No alias	component RPS23 of SSU proteome	0.05	OrthoFinder output from all 47 species
Pp3c4_3120V3.1	Pp3c4_3120	Ribosomal protein S12/S23 family protein	0.02	OrthoFinder output from all 47 species
Sam_g19536	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Sam_g19537	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Sam_g23987	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Smo145246	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	OrthoFinder output from all 47 species
Solyc09g007350.3.1	Solyc09g007350	component RPS23 of SSU proteome	0.03	OrthoFinder output from all 47 species
Solyc10g084310.2.1	Solyc10g084310	component RPS23 of SSU proteome	0.03	OrthoFinder output from all 47 species
Solyc10g086020.3.1	Solyc10g086020	component RPS23 of SSU proteome	0.03	OrthoFinder output from all 47 species
Tin_g03594	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Zm00001e006170_P001	Zm00001e006170	component RPS23 of SSU proteome	0.04	OrthoFinder output from all 47 species
Zm00001e011770_P001	Zm00001e011770	component RPS23 of SSU proteome	0.04	OrthoFinder output from all 47 species
Zm00001e019377_P001	Zm00001e019377	component RPS23 of SSU proteome	0.04	OrthoFinder output from all 47 species
Zm00001e027265_P001	Zm00001e027265	component RPS23 of SSU proteome	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004096	catalase activity	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
CC	GO:0005759	mitochondrial matrix	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006605	protein targeting	IEP	HCCA
BP	GO:0006612	protein targeting to membrane	IEP	HCCA
BP	GO:0006613	cotranslational protein targeting to membrane	IEP	HCCA
BP	GO:0006614	SRP-dependent cotranslational protein targeting to membrane	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
MF	GO:0008312	7S RNA binding	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
CC	GO:0031974	membrane-enclosed lumen	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
BP	GO:0033365	protein localization to organelle	IEP	HCCA
BP	GO:0034220	monoatomic ion transmembrane transport	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
CC	GO:0043233	organelle lumen	IEP	HCCA
BP	GO:0045047	protein targeting to ER	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
CC	GO:0048500	signal recognition particle	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
BP	GO:0051668	localization within membrane	IEP	HCCA
CC	GO:0070013	intracellular organelle lumen	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
BP	GO:0070972	protein localization to endoplasmic reticulum	IEP	HCCA
BP	GO:0071702	organic substance transport	IEP	HCCA
BP	GO:0071705	nitrogen compound transport	IEP	HCCA
BP	GO:0072594	establishment of protein localization to organelle	IEP	HCCA
BP	GO:0072599	establishment of protein localization to endoplasmic reticulum	IEP	HCCA
BP	GO:0072657	protein localization to membrane	IEP	HCCA
BP	GO:0090150	establishment of protein localization to membrane	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
BP	GO:0098655	monoatomic cation transmembrane transport	IEP	HCCA
BP	GO:1902600	proton transmembrane transport	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR006032	Ribosomal_S12/S23	73	184

External Links

No external refs found!

Sacu_v1.1_s0014.g006034

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation