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  5. Sacu_v1.1_s0013.g005700

Sacu_v1.1_s0013.g005700


Description : not classified & original description: CDS=17-12964


Gene families : OG0000978 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000978_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0013.g005700
Cluster HCCA: Cluster_38

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00048p00035310 evm_27.TU.AmTr_v1... No description available 0.04 OrthoFinder output from all 47 species
AMTR_s00089p00172750 evm_27.TU.AmTr_v1... No description available 0.04 OrthoFinder output from all 47 species
AMTR_s00700p00004930 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AT1G48090 No alias calcium-dependent lipid-binding family protein 0.09 OrthoFinder output from all 47 species
Aev_g17458 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aev_g19181 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g21604 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g32428 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene42699.t1 Aspi01Gene42699 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene55587.t1 Aspi01Gene55587 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene55589.t1 Aspi01Gene55589 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0185.g056668 No alias not classified & original description: CDS=100-1869 0.04 OrthoFinder output from all 47 species
Ceric.09G071300.1 Ceric.09G071300 not classified & original description: pacid=50588528... 0.06 OrthoFinder output from all 47 species
Ceric.09G071400.1 Ceric.09G071400 not classified & original description: pacid=50587640... 0.04 OrthoFinder output from all 47 species
Ceric.21G079300.1 Ceric.21G079300 not classified & original description: pacid=50602615... 0.05 OrthoFinder output from all 47 species
Dcu_g26863 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ehy_g19066 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01013268001 No alias No description available 0.07 OrthoFinder output from all 47 species
GSVIVT01013270001 No alias No description available 0.05 OrthoFinder output from all 47 species
GSVIVT01017643001 No alias No description available 0.05 OrthoFinder output from all 47 species
Gb_15429 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Gb_23775 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Gb_35998 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Len_g08664 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
MA_10343795g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_10426328g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
MA_10428265g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
MA_10432463g0010 No alias no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
MA_119498g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
MA_295252g0010 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
MA_342412g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_36612g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_901094g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp3g08780.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp7g07570.1 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Mp7g07580.2 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Ore_g25798 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g02430 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g17487 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc09g009350.2.1 Solyc09g009350 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Solyc09g009370.4.1 Solyc09g009370 no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
Spa_g09459 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g17786 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP HCCA
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP HCCA
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
MF GO:0042393 histone binding IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR031646 VPS13_extend_chorein 137 384
IPR031642 VPS13_mid_RBG 558 782
IPR009291 Vps62 4202 4278
IPR009291 Vps62 2178 2322
IPR009291 Vps62 1960 2086
IPR026854 VPS13-like_N 2 116
IPR010482 Peroxin 2821 2939
IPR009543 VPS13_VAB 3276 3458
No external refs found!