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  5. Sacu_v1.1_s0011.g005063

Sacu_v1.1_s0011.g005063 (ATCUL4, CUL4)


Aliases : ATCUL4, CUL4

Description : scaffold component *(CUL4) of CUL4-DDB1 ubiquitination complexes & original description: CDS=259-2718


Gene families : OG0000920 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000920_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0011.g005063
Cluster HCCA: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00095p00133680 CUL3B, ATCUL3B,... Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
AT1G26830 ATCUL3A, ATCUL3,... cullin 3 0.04 OrthoFinder output from all 47 species
AT1G69670 CUL3B, ATCUL3B cullin 3B 0.04 OrthoFinder output from all 47 species
Adi_g011667 ATCUL4, CUL4 scaffold component *(CUL4) of CUL4-DDB1 ubiquitination... 0.02 OrthoFinder output from all 47 species
Als_g29144 ATCUL4, CUL4 scaffold component *(CUL4) of CUL4-DDB1 ubiquitination... 0.02 OrthoFinder output from all 47 species
Aob_g08433 ATCUL3A, ATCUL3,... scaffold component *(CUL3) of CUL3-BTB E3 ligase... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000789.49 ATCUL3A, ATCUL3,... Cullin-3A OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020563.190 ATCUL4, CUL4 Cullin-4 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Ehy_g02888 ATCUL3A, ATCUL3,... scaffold component *(CUL3) of CUL3-BTB E3 ligase... 0.02 OrthoFinder output from all 47 species
MA_36374g0010 ATCUL4, CUL4 Cullin-4 OS=Arabidopsis thaliana (sp|q8lgh4|cul4_arath : 352.0) 0.02 OrthoFinder output from all 47 species
Solyc02g021470.4.1 ATCUL4, CUL4,... scaffold component CUL4 of CUL4-DDB1 ubiquitination... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006511 ubiquitin-dependent protein catabolic process IEA Interproscan
MF GO:0031625 ubiquitin protein ligase binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP HCCA
MF GO:0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor IEP HCCA
MF GO:0016972 thiol oxidase activity IEP HCCA
BP GO:0030258 lipid modification IEP HCCA
BP GO:0030259 lipid glycosylation IEP HCCA
MF GO:0032182 ubiquitin-like protein binding IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
MF GO:0043130 ubiquitin binding IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP HCCA
InterPro domains Description Start Stop
IPR019559 Cullin_neddylation_domain 751 811
IPR001373 Cullin_N 123 720
No external refs found!