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  5. Sacu_v1.1_s0011.g004998

Sacu_v1.1_s0011.g004998


Description : snRNP-associated protein *(SR140) & original description: CDS=162-3401


Gene families : OG0003274 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003274_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0011.g004998

Target Alias Description ECC score Gene Family Method Actions
Aev_g07313 No alias snRNP-associated protein *(SR140) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g01963 No alias snRNP-associated protein *(SR140) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.14G097400.1 Ceric.14G097400 snRNP-associated protein *(SR140) & original... 0.03 OrthoFinder output from all 47 species
Dcu_g10046 No alias snRNP-associated protein *(SR140) & original description: none 0.04 OrthoFinder output from all 47 species
Gb_01264 No alias snRNP-associated protein (SR140) 0.01 OrthoFinder output from all 47 species
LOC_Os02g08360.1 LOC_Os02g08360 snRNP-associated protein (SR140) 0.02 OrthoFinder output from all 47 species
Lfl_g11150 No alias snRNP-associated protein *(SR140) & original description: none 0.03 OrthoFinder output from all 47 species
MA_1061g0010 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Mp6g17130.1 No alias snRNP-associated protein (SR140) 0.02 OrthoFinder output from all 47 species
Msp_g14289 No alias snRNP-associated protein *(SR140) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g09321 No alias snRNP-associated protein *(SR140) & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g02308 No alias snRNP-associated protein *(SR140) & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g08483 No alias snRNP-associated protein *(SR140) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0006396 RNA processing IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP HCCA
MF GO:0004484 mRNA guanylyltransferase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
MF GO:0005049 nuclear export signal receptor activity IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP HCCA
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP HCCA
BP GO:0006370 7-methylguanosine mRNA capping IEP HCCA
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP HCCA
MF GO:0008192 RNA guanylyltransferase activity IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0009452 7-methylguanosine RNA capping IEP HCCA
MF GO:0015276 ligand-gated monoatomic ion channel activity IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016881 acid-amino acid ligase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0022834 ligand-gated channel activity IEP HCCA
MF GO:0022836 gated channel activity IEP HCCA
MF GO:0022839 monoatomic ion gated channel activity IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0036260 RNA capping IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
MF GO:0070568 guanylyltransferase activity IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140142 nucleocytoplasmic carrier activity IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 211 283
IPR000061 Surp 358 410
No external refs found!