1. Home
  2. Species
  3. Salvinia cucullata
  4. Sequence
  5. Sacu_v1.1_s0010.g004928

Sacu_v1.1_s0010.g004928 (WTF1, AtWTF1)


Aliases : WTF1, AtWTF1

Description : plastidial RNA basal splicing factor *(WTF1) & original description: CDS=1-1518


Gene families : OG0001240 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001240_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0010.g004928

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00021p00241290 WTF1, AtWTF1,... RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
AT4G01037 WTF1, AtWTF1 Ubiquitin carboxyl-terminal hydrolase family protein 0.07 OrthoFinder output from all 47 species
AT5G62990 emb1692 Ubiquitin carboxyl-terminal hydrolase family protein 0.03 OrthoFinder output from all 47 species
Adi_g016729 WTF1, AtWTF1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g040498 WTF1, AtWTF1 plastidial RNA basal splicing factor *(WTF1) & original... 0.02 OrthoFinder output from all 47 species
Aev_g04731 WTF1, AtWTF1 plastidial RNA basal splicing factor *(WTF1) & original... 0.02 OrthoFinder output from all 47 species
Ala_g02152 WTF1, AtWTF1 plastidial RNA basal splicing factor *(WTF1) & original... 0.06 OrthoFinder output from all 47 species
Als_g22428 WTF1, AtWTF1 plastidial RNA basal splicing factor *(WTF1) & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0055.g033936 WTF1, AtWTF1 plastidial RNA basal splicing factor *(WTF1) & original... 0.03 OrthoFinder output from all 47 species
Cba_g07379 WTF1, AtWTF1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g22101 WTF1, AtWTF1 plastidial RNA basal splicing factor *(WTF1) & original... 0.04 OrthoFinder output from all 47 species
Ceric.24G041500.1 WTF1, AtWTF1,... plastidial RNA basal splicing factor *(WTF1) & original... 0.03 OrthoFinder output from all 47 species
Ceric.25G074200.1 WTF1, AtWTF1,... not classified & original description: pacid=50593386... 0.03 OrthoFinder output from all 47 species
GSVIVT01027077001 WTF1, AtWTF1 RNA processing.organelle machineries.RNA... 0.07 OrthoFinder output from all 47 species
Gb_07993 WTF1, AtWTF1 WTF1 plastidial RNA basal splicing factor 0.03 OrthoFinder output from all 47 species
Gb_34809 WTF1, AtWTF1 WTF1 plastidial RNA basal splicing factor 0.04 OrthoFinder output from all 47 species
LOC_Os04g24710.1 emb1692, LOC_Os04g24710 Protein WHATS THIS FACTOR 1 homolog OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
LOC_Os05g49610.1 WTF1, AtWTF1,... WTF1 plastidial RNA basal splicing factor 0.04 OrthoFinder output from all 47 species
Len_g11779 WTF1, AtWTF1 plastidial RNA basal splicing factor *(WTF1) & original... 0.03 OrthoFinder output from all 47 species
MA_423098g0010 WTF1, AtWTF1 WTF1 plastidial RNA basal splicing factor 0.02 OrthoFinder output from all 47 species
Msp_g11347 WTF1, AtWTF1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g08880 WTF1, AtWTF1 plastidial RNA basal splicing factor *(WTF1) & original... 0.03 OrthoFinder output from all 47 species
Sam_g09594 No alias plastidial RNA basal splicing factor *(WTF1) & original... 0.02 OrthoFinder output from all 47 species
Sam_g11527 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g35883 No alias plastidial RNA basal splicing factor *(WTF1) & original... 0.06 OrthoFinder output from all 47 species
Spa_g07945 WTF1, AtWTF1 plastidial RNA basal splicing factor *(WTF1) & original... 0.03 OrthoFinder output from all 47 species
Zm00001e026570_P001 WTF1, AtWTF1,... WTF1 plastidial RNA basal splicing factor 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006457 protein folding IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0030163 protein catabolic process IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR021099 PORR_domain 103 429
No external refs found!