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  5. Sacu_v1.1_s0010.g004888

Sacu_v1.1_s0010.g004888


Description : not classified & original description: CDS=1-1152


Gene families : OG0000003 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0010.g004888
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00095120 ERF110,... Ethylene-responsive transcription factor ERF110... 0.02 OrthoFinder output from all 47 species
AMTR_s00095p00094910 HRD,... RNA biosynthesis.transcriptional activation.AP2/ERF... 0.07 OrthoFinder output from all 47 species
AT1G12610 DDF1 Integrase-type DNA-binding superfamily protein 0.03 OrthoFinder output from all 47 species
AT1G49120 No alias Integrase-type DNA-binding superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g010029 ERF72, EBP, ATEBP, RAP2.3 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g060064 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g106006 ATERF12, ERF12 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g01979 RAP2.12 transcription factor component *(HRE/RAP2.12) of... 0.04 OrthoFinder output from all 47 species
Aspi01Gene05419.t1 ORA47, Aspi01Gene05419 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene05426.t1 ORA47, Aspi01Gene05426 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene05660.t1 Aspi01Gene05660 subgroup ERF-III transcription factor & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0045.g029941 No alias subgroup ERF-III transcription factor & original... 0.04 OrthoFinder output from all 47 species
Cba_g23893 RAP2.2 transcription factor component *(HRE/RAP2.12) of... 0.03 OrthoFinder output from all 47 species
Ceric.1Z027000.1 ERF110, Ceric.1Z027000 not classified & original description: pacid=50632868... 0.03 OrthoFinder output from all 47 species
Ceric.32G042500.1 CRF3, Ceric.32G042500 subgroup ERF-VI transcription factor & original... 0.04 OrthoFinder output from all 47 species
Ceric.34G045400.1 DREB2A, DREB2,... subgroup ERF-IV/DREB2 transcription factor & original... 0.04 OrthoFinder output from all 47 species
Dcu_g03411 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g00934 ERF72, EBP, ATEBP, RAP2.3 transcription factor component *(HRE/RAP2.12) of... 0.02 OrthoFinder output from all 47 species
Ehy_g15134 HRE2 transcription factor component *(HRE/RAP2.12) of... 0.02 OrthoFinder output from all 47 species
Ehy_g15810 HRE2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01035852001 SHN3 RNA biosynthesis.transcriptional activation.AP2/ERF... 0.03 OrthoFinder output from all 47 species
Gb_26662 ATERF3, ERF3 transcription factor (ERF) 0.03 OrthoFinder output from all 47 species
LOC_Os02g10760.1 WIN1, SHN1,... transcription factor (ERF). SHN-type cutin and suberin... 0.02 OrthoFinder output from all 47 species
LOC_Os05g49700.1 LOC_Os05g49700 transcription factor (DREB) 0.03 OrthoFinder output from all 47 species
LOC_Os08g07700.1 LOC_Os08g07700 Ethylene-responsive transcription factor ERF087... 0.03 OrthoFinder output from all 47 species
Len_g03832 No alias subgroup ERF-I transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Len_g13962 ERF38, ATERF38 subgroup ERF-III transcription factor & original... 0.03 OrthoFinder output from all 47 species
Len_g25467 RAP2.4 subgroup ERF-I transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
MA_912855g0010 ERF-1, ATERF-1 transcription factor (ERF) 0.03 OrthoFinder output from all 47 species
MA_922309g0010 ERF-1, ATERF-1 transcription factor (ERF) 0.03 OrthoFinder output from all 47 species
Msp_g06492 DREB26 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g07523 ATERF4, RAP2.5,... subgroup ERF-VIII transcription factor & original... 0.03 OrthoFinder output from all 47 species
Msp_g27129 No alias subgroup ERF-I transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g04123 TINY2 subgroup ERF-III transcription factor & original... 0.04 OrthoFinder output from all 47 species
Nbi_g04652 ATERF12, ERF12 subgroup ERF-VIII transcription factor & original... 0.04 OrthoFinder output from all 47 species
Ore_g02477 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g03908 DREB2A, DREB2 subgroup ERF-IV/DREB2 transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ore_g32986 No alias subgroup ERF-I transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g02746 DEAR1, CEJ1, ATERF#011 subgroup ERF-II transcription factor *(ERF19/20) &... 0.03 OrthoFinder output from all 47 species
Pir_g17891 No alias subgroup ERF-I transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g28144 DDF1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g08267 DREB2A, DREB2 subgroup ERF-IV/DREB2 transcription factor & original... 0.04 OrthoFinder output from all 47 species
Pnu_g16792 RAP2.12 transcription factor component *(HRE/RAP2.12) of... 0.03 OrthoFinder output from all 47 species
Pnu_g21385 PUCHI subgroup ERF-VIII transcription factor & original... 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000401 LEP subgroup ERF-VIII transcription factor & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002116 DREB2A, DREB2 subgroup ERF-IV/DREB2 transcription factor & original... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0010.g004889 No alias not classified & original description: CDS=1-627 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0040.g012398 DEAR1, CEJ1, ATERF#011 not classified & original description: CDS=1-1134 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0042.g012659 No alias not classified & original description: CDS=1-1455 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0044.g013122 ORA47 not classified & original description: CDS=1-783 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0061.g015347 RAP2.6 subgroup ERF-X transcription factor & original... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0130.g022062 No alias subgroup ERF-VI transcription factor & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0225.g026324 ERF110 not classified & original description: CDS=572-2401 0.03 OrthoFinder output from all 47 species
Sam_g18921 No alias transcription factor component *(HRE/RAP2.12) of... 0.02 OrthoFinder output from all 47 species
Solyc03g095973.1.1 ABI4, SAN5,... transcription factor (DREB) 0.04 OrthoFinder output from all 47 species
Solyc03g095977.1.1 ABI4, SAN5,... transcription factor (DREB) 0.03 OrthoFinder output from all 47 species
Solyc03g117130.3.1 Solyc03g117130 transcription factor (ERF) 0.03 OrthoFinder output from all 47 species
Spa_g05270 DEAR1, CEJ1, ATERF#011 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g05271 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e003800_P001 RRTF1, Zm00001e003800 transcription factor (ERF) 0.02 OrthoFinder output from all 47 species
Zm00001e007205_P001 CBF4, DREB1D,... Dehydration-responsive element-binding protein 1E... 0.02 OrthoFinder output from all 47 species
Zm00001e009947_P001 RRTF1, Zm00001e009947 transcription factor (ERF) 0.03 OrthoFinder output from all 47 species
Zm00001e010195_P001 DREB1A, ATCBF3,... Dehydration-responsive element-binding protein 1A... 0.02 OrthoFinder output from all 47 species
Zm00001e015430_P001 CBF4, DREB1D,... Dehydration-responsive element-binding protein 1G... 0.02 OrthoFinder output from all 47 species
Zm00001e026911_P005 DREB2A, DREB2,... transcription factor (DREB) 0.03 OrthoFinder output from all 47 species
Zm00001e041620_P002 ATERF3, ERF3,... transcription factor (ERF) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001471 AP2/ERF_dom 32 80
No external refs found!