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  5. Sacu_v1.1_s0010.g004736

Sacu_v1.1_s0010.g004736


Description : REM-type transcription factor & original description: CDS=35-988


Gene families : OG0000663 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000663_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0010.g004736
Cluster HCCA: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00078p00115450 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.B3... 0.05 OrthoFinder output from all 47 species
AT5G42700 No alias AP2/B3-like transcriptional factor family protein 0.06 OrthoFinder output from all 47 species
AT5G58280 No alias AP2/B3-like transcriptional factor family protein 0.06 OrthoFinder output from all 47 species
Adi_g075571 No alias REM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g28493 No alias REM-type transcription factor & original description: none 0.08 OrthoFinder output from all 47 species
Als_g13489 No alias REM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g15351 No alias REM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g51859 No alias REM-type transcription factor & original description: none 0.1 OrthoFinder output from all 47 species
Aop_g06897 No alias REM-type transcription factor & original description: none 0.08 OrthoFinder output from all 47 species
Aop_g25439 No alias REM-type transcription factor & original description: none 0.07 OrthoFinder output from all 47 species
Aop_g36068 No alias REM-type transcription factor & original description: none 0.11 OrthoFinder output from all 47 species
Aspi01Gene04981.t1 Aspi01Gene04981 REM-type transcription factor & original description: none 0.08 OrthoFinder output from all 47 species
Aspi01Gene24780.t1 Aspi01Gene24780 REM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene54333.t1 Aspi01Gene54333 REM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene61918.t1 Aspi01Gene61918 REM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0198.g057387 No alias REM-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.02G084400.1 Ceric.02G084400 REM-type transcription factor & original description:... 0.11 OrthoFinder output from all 47 species
Ceric.06G022700.1 Ceric.06G022700 REM-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.07G043800.1 Ceric.07G043800 REM-type transcription factor & original description:... 0.09 OrthoFinder output from all 47 species
Ceric.14G017400.1 Ceric.14G017400 REM-type transcription factor & original description:... 0.09 OrthoFinder output from all 47 species
Ceric.20G036200.1 Ceric.20G036200 REM-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.35G050300.1 Ceric.35G050300 REM-type transcription factor & original description:... 0.07 OrthoFinder output from all 47 species
Ceric.38G010700.1 Ceric.38G010700 REM-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Dac_g15058 No alias REM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g18248 No alias REM-type transcription factor & original description: none 0.08 OrthoFinder output from all 47 species
Dcu_g41437 No alias REM-type transcription factor & original description: none 0.1 OrthoFinder output from all 47 species
Dcu_g43688 No alias REM-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
GSVIVT01009519001 No alias RNA biosynthesis.transcriptional activation.B3... 0.04 OrthoFinder output from all 47 species
GSVIVT01031761001 No alias RNA biosynthesis.transcriptional activation.B3... 0.05 OrthoFinder output from all 47 species
Gb_07025 No alias transcription factor (REM) 0.02 OrthoFinder output from all 47 species
Gb_35990 No alias transcription factor (REM) 0.11 OrthoFinder output from all 47 species
LOC_Os03g08620.1 LOC_Os03g08620 transcription factor (REM) 0.05 OrthoFinder output from all 47 species
Len_g01795 No alias REM-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Len_g55690 No alias REM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Len_g56640 No alias REM-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g28691 No alias REM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g29370 No alias REM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
MA_10433064g0010 No alias transcription factor (REM) 0.02 OrthoFinder output from all 47 species
Mp2g08790.1 No alias transcription factor (REM) 0.09 OrthoFinder output from all 47 species
Msp_g09553 No alias REM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g36795 No alias REM-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Msp_g44971 No alias REM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g34311 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g34487 No alias REM-type transcription factor & original description: none 0.11 OrthoFinder output from all 47 species
Nbi_g39771 No alias REM-type transcription factor & original description: none 0.12 OrthoFinder output from all 47 species
Ore_g28568 No alias REM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c2_5990V3.1 Pp3c2_5990 AP2/B3-like transcriptional factor family protein 0.01 OrthoFinder output from all 47 species
Ppi_g01929 No alias REM-type transcription factor & original description: none 0.07 OrthoFinder output from all 47 species
Ppi_g11582 No alias REM-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g11583 No alias REM-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g14471 No alias REM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g14184 No alias REM-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Sam_g48173 No alias REM-type transcription factor & original description: none 0.09 OrthoFinder output from all 47 species
Solyc01g108140.4.1 Solyc01g108140 transcription factor (REM) 0.02 OrthoFinder output from all 47 species
Solyc04g079130.2.1 Solyc04g079130 transcription factor (REM) 0.05 OrthoFinder output from all 47 species
Spa_g03459 No alias REM-type transcription factor & original description: none 0.08 OrthoFinder output from all 47 species
Spa_g49592 No alias REM-type transcription factor & original description: none 0.08 OrthoFinder output from all 47 species
Spa_g56976 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g00720 No alias REM-type transcription factor & original description: none 0.1 OrthoFinder output from all 47 species
Tin_g04671 No alias REM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g11017 No alias REM-type transcription factor & original description: none 0.09 OrthoFinder output from all 47 species
Tin_g29854 No alias REM-type transcription factor & original description: none 0.11 OrthoFinder output from all 47 species
Zm00001e000624_P003 Zm00001e000624 transcription factor (REM) 0.05 OrthoFinder output from all 47 species
Zm00001e020584_P001 Zm00001e020584 transcription factor (REM) 0.02 OrthoFinder output from all 47 species
Zm00001e040028_P004 Zm00001e040028 transcription factor (REM) 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003876 AMP deaminase activity IEP HCCA
MF GO:0004180 carboxypeptidase activity IEP HCCA
MF GO:0004185 serine-type carboxypeptidase activity IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006188 IMP biosynthetic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0007034 vacuolar transport IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
BP GO:0009123 nucleoside monophosphate metabolic process IEP HCCA
BP GO:0009124 nucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009126 purine nucleoside monophosphate metabolic process IEP HCCA
BP GO:0009127 purine nucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009156 ribonucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009161 ribonucleoside monophosphate metabolic process IEP HCCA
BP GO:0009167 purine ribonucleoside monophosphate metabolic process IEP HCCA
BP GO:0009168 purine ribonucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP HCCA
MF GO:0019239 deaminase activity IEP HCCA
BP GO:0032261 purine nucleotide salvage IEP HCCA
BP GO:0032264 IMP salvage IEP HCCA
BP GO:0043094 cellular metabolic compound salvage IEP HCCA
BP GO:0043101 purine-containing compound salvage IEP HCCA
BP GO:0043173 nucleotide salvage IEP HCCA
BP GO:0046040 IMP metabolic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
MF GO:0047623 adenosine-phosphate deaminase activity IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
MF GO:0070008 serine-type exopeptidase activity IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:0106380 purine ribonucleotide salvage IEP HCCA
InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 143 233
No external refs found!