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  5. Sacu_v1.1_s0008.g003993

Sacu_v1.1_s0008.g003993 (SPA4)


Aliases : SPA4

Description : regulatory component *(SPA) of COP1-SPA light signal transduction E3 ubiquitin ligase complex & original description: CDS=38-2623


Gene families : OG0000638 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000638_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0008.g003993
    • Cluster HCCA: Cluster_45

    Target Alias Description ECC score Gene Family Method Actions
    Ala_g07511 FUS1, EMB168,... component *(COP1) of COP1-SPA light signal transduction... 0.04 OrthoFinder output from all 47 species
    Aob_g02304 FUS1, EMB168,... component *(COP1) of COP1-SPA light signal transduction... 0.04 OrthoFinder output from all 47 species
    Aob_g05358 SPA4 regulatory component *(SPA) of COP1-SPA light signal... 0.03 OrthoFinder output from all 47 species
    Cre02.g085050 FUS1, EMB168,... E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
    Cre13.g602700 SPA1 Protein modification.phosphorylation.PEK kinase 0.01 OrthoFinder output from all 47 species
    Dde_g01612 FUS1, EMB168,... component *(COP1) of COP1-SPA light signal transduction... 0.03 OrthoFinder output from all 47 species
    MA_423393g0010 SPA3 protein kinase (PEK). regulator component SPA of... 0.02 OrthoFinder output from all 47 species
    Pnu_g07513 SPA4 regulatory component *(SPA) of COP1-SPA light signal... 0.03 OrthoFinder output from all 47 species
    Ppi_g07004 SPA4 regulatory component *(SPA) of COP1-SPA light signal... 0.03 OrthoFinder output from all 47 species
    Zm00001e015983_P001 FUS1, EMB168,... protein kinase (PEK). component COP1 of COP1-SPA E3... 0.02 OrthoFinder output from all 47 species
    Zm00001e019928_P005 SPA4, Zm00001e019928 protein kinase (PEK). regulator component SPA of... 0.02 OrthoFinder output from all 47 species

    Type GO Term Name Evidence Source
    MF GO:0005515 protein binding IEA Interproscan
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    Type GO Term Name Evidence Source
    MF GO:0004252 serine-type endopeptidase activity IEP HCCA
    MF GO:0030151 molybdenum ion binding IEP HCCA
    MF GO:0044183 protein folding chaperone IEP HCCA
    BP GO:0110102 ribulose bisphosphate carboxylase complex assembly IEP HCCA
    InterPro domains Description Start Stop
    IPR001680 WD40_repeat 622 661
    IPR001680 WD40_repeat 710 745
    No external refs found!