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  5. Sacu_v1.1_s0006.g003194

Sacu_v1.1_s0006.g003194


Description : not classified & original description: CDS=1-3084


Gene families : OG0001929 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001929_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0006.g003194

Target Alias Description ECC score Gene Family Method Actions
AT1G67040 No alias unknown protein; FUNCTIONS IN: molecular_function... 0.02 OrthoFinder output from all 47 species
AT3G58650 No alias unknown protein; FUNCTIONS IN: molecular_function... 0.03 OrthoFinder output from all 47 species
Ceric.06G066100.1 Ceric.06G066100 not classified & original description: pacid=50619532... 0.04 OrthoFinder output from all 47 species
GSVIVT01035042001 No alias No description available 0.03 OrthoFinder output from all 47 species
LOC_Os03g19080.3 LOC_Os03g19080 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Solyc01g060410.4.1 Solyc01g060410 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Spa_g41418 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Tin_g08470 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e001394_P001 Zm00001e001394 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Zm00001e038358_P001 Zm00001e038358 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
InterPro domains Description Start Stop
IPR025486 DUF4378 825 991
IPR032795 DUF3741-assoc 110 128
No external refs found!