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  5. Sacu_v1.1_s0005.g002893

Sacu_v1.1_s0005.g002893


Description : not classified & original description: CDS=719-2329


Gene families : OG0001733 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001733_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0005.g002893
Cluster HCCA: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
AT1G60060 No alias Serine/threonine-protein kinase WNK (With No Lysine)-related 0.05 OrthoFinder output from all 47 species
Ala_g21086 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g08513 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g09828 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g50633 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g10450 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene14295.t1 Aspi01Gene14295 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene39538.t1 Aspi01Gene39538 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene51520.t1 Aspi01Gene51520 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g05785 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g10937 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g11095 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g14642 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g15759 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01009438001 No alias Protein RICE SALT SENSITIVE 3 OS=Oryza sativa subsp. japonica 0.03 OrthoFinder output from all 47 species
Gb_06730 No alias Protein RICE SALT SENSITIVE 3 OS=Oryza sativa subsp.... 0.03 OrthoFinder output from all 47 species
LOC_Os02g50900.1 LOC_Os02g50900 Protein RICE SALT SENSITIVE 3 OS=Oryza sativa subsp.... 0.02 OrthoFinder output from all 47 species
Len_g07737 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g41378 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g07918 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_394035g0010 No alias Protein RICE SALT SENSITIVE 3 OS=Oryza sativa subsp.... 0.04 OrthoFinder output from all 47 species
Nbi_g25320 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g13057 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g63857 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0031.g010698 No alias not classified & original description: CDS=200-1438 0.03 OrthoFinder output from all 47 species
Sam_g25625 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g38297 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc04g078520.3.1 Solyc04g078520 Protein RICE SALT SENSITIVE 3 OS=Oryza sativa subsp.... 0.04 OrthoFinder output from all 47 species
Spa_g09211 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g11635 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e036084_P002 Zm00001e036084 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009605 response to external stimulus IEP HCCA
BP GO:0009606 tropism IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010274 hydrotropism IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR025610 MYC/MYB_N 39 287
No external refs found!