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  5. Sacu_v1.1_s0004.g002475

Sacu_v1.1_s0004.g002475 (ATPPC3, PPC3)


Aliases : ATPPC3, PPC3

Description : EC_4.1 carbon-carbon lyase & original description: CDS=296-3220


Gene families : OG0000643 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000643_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0004.g002475
Cluster HCCA: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
AT1G53310 PEPC1, ATPEPC1,... phosphoenolpyruvate carboxylase 1 0.03 OrthoFinder output from all 47 species
Aop_g03839 ATPPC3, PPC3 EC_4.1 carbon-carbon lyase & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0006.g010453 PEPC1, ATPEPC1,... EC_4.1 carbon-carbon lyase & original description: CDS=306-3104 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021319.59 ATPPC4, PPC4 Phosphoenolpyruvate carboxylase 3 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dac_g23356 PPC2, ATPPC2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g14233 PPC2, ATPPC2 EC_4.1 carbon-carbon lyase & original description: none 0.05 OrthoFinder output from all 47 species
Solyc04g006970.4.1 ATPPC4, PPC4,... PEP carboxylase 0.03 OrthoFinder output from all 47 species
Spa_g12382 PEPC1, ATPEPC1,... EC_4.1 carbon-carbon lyase & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006099 tricarboxylic acid cycle IEA Interproscan
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEA Interproscan
BP GO:0015977 carbon fixation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0003779 actin binding IEP HCCA
MF GO:0004345 glucose-6-phosphate dehydrogenase activity IEP HCCA
MF GO:0004601 peroxidase activity IEP HCCA
MF GO:0005048 signal sequence binding IEP HCCA
CC GO:0005789 endoplasmic reticulum membrane IEP HCCA
BP GO:0005996 monosaccharide metabolic process IEP HCCA
BP GO:0006006 glucose metabolic process IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006621 protein retention in ER lumen IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0016042 lipid catabolic process IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
BP GO:0019318 hexose metabolic process IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
BP GO:0032507 maintenance of protein location in cell IEP HCCA
MF GO:0033218 amide binding IEP HCCA
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP HCCA
MF GO:0042277 peptide binding IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0045185 maintenance of protein location IEP HCCA
MF GO:0046923 ER retention sequence binding IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
BP GO:0051235 maintenance of location IEP HCCA
BP GO:0051651 maintenance of location in cell IEP HCCA
BP GO:0072595 maintenance of protein localization in organelle IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
InterPro domains Description Start Stop
IPR021135 PEP_COase 47 974
No external refs found!