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  5. Sacu_v1.1_s0004.g002358

Sacu_v1.1_s0004.g002358


Description : not classified & original description: CDS=9-1268


Gene families : OG0002169 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002169_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0004.g002358
Cluster HCCA: Cluster_57

Target Alias Description ECC score Gene Family Method Actions
Aop_g02589 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g15861 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g18339 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.14G021400.1 Ceric.14G021400 not classified & original description: pacid=50634518... 0.04 OrthoFinder output from all 47 species
Ceric.28G070200.1 Ceric.28G070200 not classified & original description: pacid=50570322... 0.03 OrthoFinder output from all 47 species
Dde_g25687 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10437167g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp2g21310.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Nbi_g07875 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g02181 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g24720 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g52427 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Smo439533 No alias No description available 0.03 OrthoFinder output from all 47 species
Spa_g10061 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004592 pantoate-beta-alanine ligase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005849 mRNA cleavage factor complex IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006378 mRNA polyadenylation IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006575 cellular modified amino acid metabolic process IEP HCCA
BP GO:0006766 vitamin metabolic process IEP HCCA
BP GO:0006767 water-soluble vitamin metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008175 tRNA methyltransferase activity IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
BP GO:0008654 phospholipid biosynthetic process IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009110 vitamin biosynthetic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0015939 pantothenate metabolic process IEP HCCA
BP GO:0015940 pantothenate biosynthetic process IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016426 tRNA (adenine) methyltransferase activity IEP HCCA
MF GO:0016429 tRNA (adenine-N1-)-methyltransferase activity IEP HCCA
BP GO:0016485 protein processing IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP HCCA
MF GO:0016846 carbon-sulfur lyase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016881 acid-amino acid ligase activity IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
BP GO:0030488 tRNA methylation IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0031124 mRNA 3'-end processing IEP HCCA
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP HCCA
BP GO:0032259 methylation IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0034708 methyltransferase complex IEP HCCA
BP GO:0042364 water-soluble vitamin biosynthetic process IEP HCCA
BP GO:0042398 cellular modified amino acid biosynthetic process IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
CC GO:0043527 tRNA methyltransferase complex IEP HCCA
BP GO:0043631 RNA polyadenylation IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
MF GO:0070567 cytidylyltransferase activity IEP HCCA
BP GO:0071586 CAAX-box protein processing IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0072330 monocarboxylic acid biosynthetic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!