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  5. Sacu_v1.1_s0004.g002071

Sacu_v1.1_s0004.g002071 (NFD1)


Aliases : NFD1

Description : component *(bL21m) of large mitoribosomal-subunit proteome & original description: CDS=1-780


Gene families : OG0004500 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004500_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0004.g002071

Target Alias Description ECC score Gene Family Method Actions
Adi_g007322 NFD1 component *(bL21m) of large mitoribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Adi_g007323 NFD1 component *(bL21m) of large mitoribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Ceric.36G065300.1 NFD1, Ceric.36G065300 component *(bL21m) of large mitoribosomal-subunit... 0.04 OrthoFinder output from all 47 species
MA_747819g0010 NFD1 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Solyc02g078200.4.1 NFD1, Solyc02g078200 component mtRPL21 of large ribosomal subunit proteome 0.02 OrthoFinder output from all 47 species
Zm00001e032388_P001 NFD1, Zm00001e032388 component mtRPL21 of large ribosomal subunit proteome 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005840 ribosome IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008199 ferric iron binding IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0017025 TBP-class protein binding IEP HCCA
BP GO:0018142 protein-DNA covalent cross-linking IEP HCCA
BP GO:0018143 nucleic acid-protein covalent cross-linking IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
MF GO:0140296 general transcription initiation factor binding IEP HCCA
InterPro domains Description Start Stop
IPR028909 L21p-like 148 248
No external refs found!