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  5. Sacu_v1.1_s0003.g001950

Sacu_v1.1_s0003.g001950 (ATPDX1.3, RSR4,...)


Aliases : ATPDX1.3, RSR4, ATPDX1, PDX1.3, PDX1

Description : synthase component of pyridoxal 5-phosphate synthase complex & original description: CDS=1-2100


Gene families : OG0001625 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001625_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0003.g001950

Target Alias Description ECC score Gene Family Method Actions
Ala_g04991 ATPDX1.3, RSR4,... synthase component of pyridoxal 5-phosphate synthase... 0.02 OrthoFinder output from all 47 species
Lfl_g40581 ATPDX1.3, RSR4,... synthase component of pyridoxal 5-phosphate synthase... 0.02 OrthoFinder output from all 47 species
Pir_g03349 ATPDX1.3, RSR4,... synthase component of pyridoxal 5-phosphate synthase... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP HCCA
BP GO:0002098 tRNA wobble uridine modification IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0004420 hydroxymethylglutaryl-CoA reductase (NADPH) activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006383 transcription by RNA polymerase III IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0015936 coenzyme A metabolic process IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
CC GO:0033588 elongator holoenzyme complex IEP HCCA
BP GO:0033865 nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0042274 ribosomal small subunit biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR033755 PdxS/SNZ_N 24 228
No external refs found!