Sacu_v1.1_s0001.g000757


Description : E3 ubiquitin ligase *(RMA/MUSE) & original description: CDS=1-1875


Gene families : OG0000266 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000266_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0001.g000757
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
Adi_g008787 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g24081 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g07861 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g09681 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g13035 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g38085 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01009643001 No alias No description available 0.02 OrthoFinder output from all 47 species
Gb_11311 No alias RING-HC-class E3 ligase 0.02 OrthoFinder output from all 47 species
LOC_Os01g56070.3 LOC_Os01g56070 RING-HC-class E3 ligase 0.02 OrthoFinder output from all 47 species
LOC_Os05g39380.1 LOC_Os05g39380 RING-HC-class E3 ligase 0.02 OrthoFinder output from all 47 species
Lfl_g04855 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g07919 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g38674 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g15941 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc10g078900.3.1 Solyc10g078900 no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Zm00001e026195_P001 Zm00001e026195 RING-HC-class E3 ligase 0.02 OrthoFinder output from all 47 species
Zm00001e031880_P001 Zm00001e031880 RING-HC-class E3 ligase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004620 phospholipase activity IEP HCCA
MF GO:0004650 polygalacturonase activity IEP HCCA
BP GO:0005984 disaccharide metabolic process IEP HCCA
BP GO:0005991 trehalose metabolic process IEP HCCA
BP GO:0005992 trehalose biosynthetic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
MF GO:0008081 phosphoric diester hydrolase activity IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
BP GO:0009312 oligosaccharide biosynthetic process IEP HCCA
MF GO:0010181 FMN binding IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016298 lipase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0046351 disaccharide biosynthetic process IEP HCCA
MF GO:0050290 sphingomyelin phosphodiesterase D activity IEP HCCA
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 325 367
No external refs found!