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  5. Sacu_v1.1_s0001.g000757

Sacu_v1.1_s0001.g000757


Description : E3 ubiquitin ligase *(RMA/MUSE) & original description: CDS=1-1875


Gene families : OG0000266 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000266_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0001.g000757
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
Adi_g008787 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g24081 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g07861 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g09681 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g13035 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g38085 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01009643001 No alias No description available 0.02 OrthoFinder output from all 47 species
Gb_11311 No alias RING-HC-class E3 ligase 0.02 OrthoFinder output from all 47 species
LOC_Os01g56070.3 LOC_Os01g56070 RING-HC-class E3 ligase 0.02 OrthoFinder output from all 47 species
LOC_Os05g39380.1 LOC_Os05g39380 RING-HC-class E3 ligase 0.02 OrthoFinder output from all 47 species
Lfl_g04855 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g07919 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g38674 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g15941 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc10g078900.3.1 Solyc10g078900 no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Zm00001e026195_P001 Zm00001e026195 RING-HC-class E3 ligase 0.02 OrthoFinder output from all 47 species
Zm00001e031880_P001 Zm00001e031880 RING-HC-class E3 ligase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004620 phospholipase activity IEP HCCA
MF GO:0004650 polygalacturonase activity IEP HCCA
BP GO:0005984 disaccharide metabolic process IEP HCCA
BP GO:0005991 trehalose metabolic process IEP HCCA
BP GO:0005992 trehalose biosynthetic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
MF GO:0008081 phosphoric diester hydrolase activity IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
BP GO:0009312 oligosaccharide biosynthetic process IEP HCCA
MF GO:0010181 FMN binding IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016298 lipase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0046351 disaccharide biosynthetic process IEP HCCA
MF GO:0050290 sphingomyelin phosphodiesterase D activity IEP HCCA
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 325 367
No external refs found!