Sacu_v1.1_s0001.g000703

Description : component *(eL20) of large ribosomal-subunit (LSU) proteome & original description: CDS=125-661

Gene families : OG0001533 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001533_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sacu_v1.1_s0001.g000703

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00003p00234980	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	OrthoFinder output from all 47 species
AT1G29965	No alias	Ribosomal protein L18ae/LX family protein	0.04	OrthoFinder output from all 47 species
AT2G34480	No alias	Ribosomal protein L18ae/LX family protein	0.12	OrthoFinder output from all 47 species
AT3G14600	No alias	Ribosomal protein L18ae/LX family protein	0.11	OrthoFinder output from all 47 species
Adi_g041918	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ala_g37995	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Aob_g37546	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Aop_g20873	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000615.59	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.13	OrthoFinder output from all 47 species
Cre01.g047750	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.14	OrthoFinder output from all 47 species
Dac_g15791	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Dac_g26638	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Dcu_g42842	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
GSVIVT01000485001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.06	OrthoFinder output from all 47 species
GSVIVT01021430001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.11	OrthoFinder output from all 47 species
GSVIVT01021433001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.09	OrthoFinder output from all 47 species
LOC_Os01g47660.1	LOC_Os01g47660	component RPL18a of LSU proteome component	0.08	OrthoFinder output from all 47 species
LOC_Os01g54870.1	LOC_Os01g54870	component RPL18a of LSU proteome component	0.07	OrthoFinder output from all 47 species
LOC_Os05g49030.1	LOC_Os05g49030	component RPL18a of LSU proteome component	0.06	OrthoFinder output from all 47 species
MA_12029g0010	No alias	component RPL18a of LSU proteome component	0.04	OrthoFinder output from all 47 species
Mp1g17730.1	No alias	component RPL18a of LSU proteome component	0.06	OrthoFinder output from all 47 species
Sam_g14890	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g28083	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Sam_g28696	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g32152	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Sam_g47831	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g48102	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Smo227198	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.02	OrthoFinder output from all 47 species
Spa_g43846	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Zm00001e026540_P001	Zm00001e026540	component RPL18a of LSU proteome component	0.11	OrthoFinder output from all 47 species
Zm00001e032436_P001	Zm00001e032436	component RPL18a of LSU proteome component	0.11	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004512	inositol-3-phosphate synthase activity	IEP	HCCA
MF	GO:0004518	nuclease activity	IEP	HCCA
BP	GO:0006020	inositol metabolic process	IEP	HCCA
BP	GO:0006021	inositol biosynthetic process	IEP	HCCA
BP	GO:0006066	alcohol metabolic process	IEP	HCCA
BP	GO:0006457	protein folding	IEP	HCCA
BP	GO:0006644	phospholipid metabolic process	IEP	HCCA
BP	GO:0008654	phospholipid biosynthetic process	IEP	HCCA
BP	GO:0016051	carbohydrate biosynthetic process	IEP	HCCA
MF	GO:0016853	isomerase activity	IEP	HCCA
MF	GO:0016872	intramolecular lyase activity	IEP	HCCA
BP	GO:0019751	polyol metabolic process	IEP	HCCA
BP	GO:0034637	cellular carbohydrate biosynthetic process	IEP	HCCA
MF	GO:0044183	protein folding chaperone	IEP	HCCA
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	HCCA
BP	GO:0046165	alcohol biosynthetic process	IEP	HCCA
BP	GO:0046173	polyol biosynthetic process	IEP	HCCA
BP	GO:0090407	organophosphate biosynthetic process	IEP	HCCA
MF	GO:0140662	ATP-dependent protein folding chaperone	IEP	HCCA
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	HCCA
BP	GO:1901617	organic hydroxy compound biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR023573	Ribosomal_L18a//L18Ae/LX	48	169
IPR002885	Pentatricopeptide_repeat	200	229
IPR002885	Pentatricopeptide_repeat	172	196
IPR002885	Pentatricopeptide_repeat	96	145

External Links

No external refs found!

Sacu_v1.1_s0001.g000703

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation