1. Home
  2. Species
  3. Salvinia cucullata
  4. Sequence
  5. Sacu_v1.1_s0001.g000689

Sacu_v1.1_s0001.g000689 (TAF4, TAF4B)


Aliases : TAF4, TAF4B

Description : component *(TAF4) of TFIId basal transcription regulation complex & original description: CDS=130-2217


Gene families : OG0002362 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002362_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0001.g000689
Cluster HCCA: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
Dcu_g42653 TAF4, TAF4B component *(TAF4) of TFIId basal transcription... 0.03 OrthoFinder output from all 47 species
Mp2g09230.1 TAF4, TAF4B component TAF4 of TFIId basal transcription regulation complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005669 transcription factor TFIID complex IEA Interproscan
BP GO:0006352 DNA-templated transcription initiation IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
MF GO:0016832 aldehyde-lyase activity IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR007900 TAF4_C 419 727
IPR022003 RST 150 213
No external refs found!