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  5. Sacu_v1.1_s0001.g000612

Sacu_v1.1_s0001.g000612


Description : not classified & original description: CDS=302-3289


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0001.g000612

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00098p00155650 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g39350... 0.03 OrthoFinder output from all 47 species
Adi_g003279 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g036787 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g43139 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g05216 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g27909 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30199 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g08381 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene34731.t1 Aspi01Gene34731 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s4317.g118724 No alias not classified & original description: CDS=1-465 0.02 OrthoFinder output from all 47 species
Cba_g29580 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.05G080500.1 Ceric.05G080500 not classified & original description: pacid=50577586... 0.03 OrthoFinder output from all 47 species
Ceric.28G001700.1 Ceric.28G001700 not classified & original description: pacid=50570577... 0.02 OrthoFinder output from all 47 species
Cre12.g483700 OSB4 Cell cycle.organelle machineries.DNA... 0.02 OrthoFinder output from all 47 species
Dcu_g12504 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g19168 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g27009 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g19229 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os01g72049.1 PTAC9, OSB2,... ssDNA-binding protein (OSB). TAC9 cofactor of... 0.02 OrthoFinder output from all 47 species
LOC_Os09g34870.1 LOC_Os09g34870 Pentatricopeptide repeat-containing protein At2g36980,... 0.02 OrthoFinder output from all 47 species
LOC_Os12g08140.1 LOC_Os12g08140 Pentatricopeptide repeat-containing protein At2g33760... 0.02 OrthoFinder output from all 47 species
Pnu_g03883 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g63789 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0106.g020289 No alias not classified & original description: CDS=1-1509 0.03 OrthoFinder output from all 47 species
Sam_g11676 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g24764 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g049810.4.1 Solyc01g049810 Pentatricopeptide repeat-containing protein At5g56310... 0.02 OrthoFinder output from all 47 species
Solyc03g115800.1.1 Solyc03g115800 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Tin_g17636 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g44640 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006457 protein folding IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
MF GO:0051011 microtubule minus-end binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 38 65
IPR002885 Pentatricopeptide_repeat 387 411
IPR002885 Pentatricopeptide_repeat 897 911
IPR002885 Pentatricopeptide_repeat 718 748
IPR002885 Pentatricopeptide_repeat 690 712
IPR002885 Pentatricopeptide_repeat 516 546
IPR002885 Pentatricopeptide_repeat 869 896
IPR002885 Pentatricopeptide_repeat 488 512
IPR002885 Pentatricopeptide_repeat 211 256
IPR002885 Pentatricopeptide_repeat 311 359
IPR002885 Pentatricopeptide_repeat 614 662
IPR002885 Pentatricopeptide_repeat 109 157
IPR002885 Pentatricopeptide_repeat 413 459
No external refs found!