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  5. Sacu_v1.1_s0001.g000438

Sacu_v1.1_s0001.g000438


Description : not classified & original description: CDS=150-998


Gene families : OG0000714 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000714_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0001.g000438
Cluster HCCA: Cluster_48

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00067p00150350 evm_27.TU.AmTr_v1... RNA processing.ribonuclease activities.RNase P... 0.02 OrthoFinder output from all 47 species
Adi_g086816 No alias component *(RPP25/POP6) or RPP20/POP7 of RNA-dependent... 0.02 OrthoFinder output from all 47 species
Adi_g120919 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0007.g010566 No alias not classified & original description: CDS=50-838 0.03 OrthoFinder output from all 47 species
Cre09.g409500 No alias RNA processing.ribonuclease activities.RNase P... 0.03 OrthoFinder output from all 47 species
Msp_g04393 No alias component *(RPP25/POP6) or RPP20/POP7 of RNA-dependent... 0.02 OrthoFinder output from all 47 species
Nbi_g31238 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g33781 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e012088_P003 Zm00001e012088 component RPP25/POP6 | RPP20/POP7 of RNA-dependent RNase... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
MF GO:0030976 thiamine pyrophosphate binding IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0050997 quaternary ammonium group binding IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002775 DNA/RNA-bd_Alba-like 19 76
No external refs found!