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  5. Sacu_v1.1_s0001.g000072

Sacu_v1.1_s0001.g000072


Description : pre-60S ribosomal subunit assembly factor *(EBP2) & original description: CDS=1-969


Gene families : OG0004650 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004650_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0001.g000072
Cluster HCCA: Cluster_48

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00176430 evm_27.TU.AmTr_v1... Probable rRNA-processing protein EBP2 homolog... 0.03 OrthoFinder output from all 47 species
AT3G22660 No alias rRNA processing protein-related 0.04 OrthoFinder output from all 47 species
Aop_g09403 No alias pre-60S ribosomal subunit assembly factor *(EBP2) &... 0.03 OrthoFinder output from all 47 species
Azfi_s0705.g082696 No alias pre-60S ribosomal subunit assembly factor *(EBP2) &... 0.04 OrthoFinder output from all 47 species
Ceric.28G019100.1 Ceric.28G019100 pre-60S ribosomal subunit assembly factor *(EBP2) &... 0.03 OrthoFinder output from all 47 species
MA_138177g0010 No alias pre-60S ribosomal subunit assembly factor (EBP2) 0.02 OrthoFinder output from all 47 species
Nbi_g17719 No alias pre-60S ribosomal subunit assembly factor *(EBP2) &... 0.03 OrthoFinder output from all 47 species
Sam_g25020 No alias pre-60S ribosomal subunit assembly factor *(EBP2) &... 0.02 OrthoFinder output from all 47 species
Smo175633 No alias Probable rRNA-processing protein EBP2 homolog... 0.03 OrthoFinder output from all 47 species
Tin_g00625 No alias pre-60S ribosomal subunit assembly factor *(EBP2) &... 0.03 OrthoFinder output from all 47 species
Zm00001e013941_P001 Zm00001e013941 pre-60S ribosomal subunit assembly factor (EBP2) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR008610 Ebp2 42 312
No external refs found!