1. Home
  2. Species
  3. Azolla filiculoides
  4. Sequence
  5. Azfi_s3975.g117444

Azfi_s3975.g117444 (SPK1)


Aliases : SPK1

Description : RopGEF guanine nucleotide exchange factor *(SPIKE) & original description: CDS=12-3911


Gene families : OG0004216 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004216_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s3975.g117444
Cluster HCCA: Cluster_46

Target Alias Description ECC score Gene Family Method Actions
Als_g01211 SPK1 RopGEF guanine nucleotide exchange factor *(SPIKE) &... 0.03 OrthoFinder output from all 47 species
Aop_g20118 SPK1 RopGEF guanine nucleotide exchange factor *(SPIKE) &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene72116.t1 SPK1, Aspi01Gene72116 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g18398 SPK1 RopGEF guanine nucleotide exchange factor *(SPIKE) &... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0207.g025796 SPK1 RopGEF guanine nucleotide exchange factor *(SPIKE) &... 0.03 OrthoFinder output from all 47 species
Spa_g09085 SPK1 RopGEF guanine nucleotide exchange factor *(SPIKE) &... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004089 carbonate dehydratase activity IEP HCCA
BP GO:0010564 regulation of cell cycle process IEP HCCA
BP GO:0032954 regulation of cytokinetic process IEP HCCA
BP GO:0032955 regulation of division septum assembly IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0044087 regulation of cellular component biogenesis IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
BP GO:0051301 cell division IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
BP GO:1901891 regulation of cell septum assembly IEP HCCA
InterPro domains Description Start Stop
IPR046770 DOCKER_Lobe_B 83 164
IPR027007 C2_DOCK-type_domain 358 539
IPR046769 DOCKER_Lobe_A 1259 1298
No external refs found!