Aliases : CRR22
Description : not classified & original description: CDS=1-2094
Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00019p00080380 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At1g59720,... | 0.05 | OrthoFinder output from all 47 species | |
AMTR_s00066p00062930 | EMB2261,... | Pentatricopeptide repeat-containing protein At3g49170,... | 0.03 | OrthoFinder output from all 47 species | |
AMTR_s00111p00107400 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At4g21065... | 0.03 | OrthoFinder output from all 47 species | |
AT3G47530 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
AT4G25270 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | OrthoFinder output from all 47 species | |
Adi_g003740 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Adi_g003810 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Adi_g004398 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Adi_g005487 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Adi_g008014 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Adi_g014239 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Adi_g025688 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Adi_g033331 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Adi_g034364 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Adi_g039747 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Adi_g043352 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Adi_g067160 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Adi_g069053 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Adi_g074694 | EMB2261 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Adi_g079527 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Adi_g081792 | CRR22 | ssDNA-binding protein *(OSB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Adi_g098232 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Adi_g116035 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Aev_g27648 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Aev_g38989 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ala_g13294 | VAC1, ECB2, ATECB2 | ssDNA-binding protein *(OSB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ala_g16821 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ala_g20999 | OTP84 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ala_g31201 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ala_g32161 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ala_g34402 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Als_g07022 | No alias | ssDNA-binding protein *(OSB) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Als_g07472 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Als_g18060 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Als_g19247 | EMB2758 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Als_g22698 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Als_g30788 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Als_g30874 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Als_g46291 | OTP86 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Als_g55221 | VAC1, ECB2, ATECB2 | ssDNA-binding protein *(OSB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Als_g61738 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Aob_g08458 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Aob_g27921 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Aob_g28230 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Aob_g28645 | VAC1, ECB2, ATECB2 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Aob_g28679 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Aob_g37584 | OTP86 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Aspi01Gene00209.t1 | EMB2758, Aspi01Gene00209 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Aspi01Gene01654.t1 | PTAC9, OSB2,... | ssDNA-binding protein *(OSB) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Aspi01Gene03412.t1 | Aspi01Gene03412 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Aspi01Gene10286.t1 | Aspi01Gene10286 | not classified & original description: none | 0.06 | OrthoFinder output from all 47 species | |
Aspi01Gene12038.t1 | Aspi01Gene12038 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Aspi01Gene19894.t1 | Aspi01Gene19894 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Aspi01Gene23472.t2 | CRR22, Aspi01Gene23472 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Aspi01Gene27883.t1 | Aspi01Gene27883 | ssDNA-binding protein *(OSB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Aspi01Gene28051.t1 | Aspi01Gene28051 | cofactor of plastid-encoded RNA polymerase *(TAC9) &... | 0.07 | OrthoFinder output from all 47 species | |
Aspi01Gene28168.t1 | Aspi01Gene28168 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Aspi01Gene29787.t2 | Aspi01Gene29787 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Aspi01Gene34133.t1 | Aspi01Gene34133 | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
Azfi_s0043.g027128 | No alias | not classified & original description: CDS=146-1684 | 0.06 | OrthoFinder output from all 47 species | |
Azfi_s0069.g036571 | No alias | not classified & original description: CDS=1-1638 | 0.03 | OrthoFinder output from all 47 species | |
Azfi_s0090.g042642 | No alias | not classified & original description: CDS=39-695 | 0.04 | OrthoFinder output from all 47 species | |
Azfi_s0345.g065835 | No alias | not classified & original description: CDS=1-1926 | 0.03 | OrthoFinder output from all 47 species | |
Cba_g11729 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Cba_g20779 | EMB2758 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Cba_g34536 | VAC1, ECB2, ATECB2 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Cba_g34761 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Cba_g45872 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Ceric.01G062600.1 | Ceric.01G062600 | not classified & original description: pacid=50592906... | 0.04 | OrthoFinder output from all 47 species | |
Ceric.03G039400.1 | Ceric.03G039400 | not classified & original description: pacid=50571919... | 0.04 | OrthoFinder output from all 47 species | |
Ceric.1Z254100.1 | Ceric.1Z254100 | not classified & original description: pacid=50632850... | 0.04 | OrthoFinder output from all 47 species | |
Ceric.29G050000.1 | Ceric.29G050000 | ssDNA-binding protein *(OSB) & original description:... | 0.04 | OrthoFinder output from all 47 species | |
Ceric.29G060200.1 | Ceric.29G060200 | not classified & original description: pacid=50624987... | 0.04 | OrthoFinder output from all 47 species | |
Ceric.34G063100.1 | Ceric.34G063100 | not classified & original description: pacid=50623551... | 0.04 | OrthoFinder output from all 47 species | |
Ceric.35G035600.1 | Ceric.35G035600 | not classified & original description: pacid=50580802... | 0.03 | OrthoFinder output from all 47 species | |
Dac_g16073 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Dac_g30285 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Dcu_g07152 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Dcu_g08971 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Dcu_g09653 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Dcu_g17092 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Dcu_g38682 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Dcu_g40867 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Dcu_g45907 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Dde_g04851 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Dde_g10840 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Dde_g21320 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Dde_g22351 | No alias | ssDNA-binding protein *(OSB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Dde_g28151 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
Dde_g28844 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Dde_g29998 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Dde_g35433 | No alias | ssDNA-binding protein *(OSB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ehy_g04950 | EMB2758 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ehy_g13325 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ehy_g19239 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ehy_g24725 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ehy_g26542 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Gb_36775 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.04 | OrthoFinder output from all 47 species | |
LOC_Os03g56850.1 | LOC_Os03g56850 | Pentatricopeptide repeat-containing protein At4g21300... | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os05g37225.1 | LOC_Os05g37225 | no hits & (original description: none) | 0.04 | OrthoFinder output from all 47 species | |
LOC_Os09g34870.1 | LOC_Os09g34870 | Pentatricopeptide repeat-containing protein At2g36980,... | 0.04 | OrthoFinder output from all 47 species | |
Len_g05253 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Len_g14520 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Len_g16432 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Len_g39568 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Len_g44704 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Len_g54500 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Msp_g10059 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Msp_g14854 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
Msp_g31656 | OTP86 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Msp_g33650 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Msp_g37918 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Msp_g46446 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Msp_g48531 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Msp_g48606 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Nbi_g05439 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Nbi_g08794 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Nbi_g15698 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Ore_g01285 | OTP82 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ore_g02390 | EMB2758 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ore_g03052 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ore_g04075 | OTP84 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ore_g08923 | OTP84 | not classified & original description: none | 0.06 | OrthoFinder output from all 47 species | |
Ore_g12878 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ore_g21816 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Pir_g07719 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Pir_g12795 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
Pir_g13491 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Pir_g13547 | REME1 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Pir_g14870 | No alias | ssDNA-binding protein *(OSB) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
Pir_g20224 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Pir_g57212 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Pir_g57666 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Pir_g57699 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Pir_g57727 | VAC1, ECB2, ATECB2 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Pir_g63381 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Pir_g63491 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Pir_g63633 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Pir_g63860 | EMB2758 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Pir_g66342 | OTP84 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Pnu_g22375 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ppi_g09492 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ppi_g10335 | EMB2758 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ppi_g31163 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ppi_g32253 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ppi_g40056 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ppi_g42323 | EMB2261 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ppi_g48448 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Ppi_g53972 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Ppi_g57817 | No alias | ssDNA-binding protein *(OSB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ppi_g61267 | REME1 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0007.g003527 | EMB2758 | not classified & original description: CDS=1-1284 | 0.05 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0013.g005946 | No alias | not classified & original description: CDS=1-1029 | 0.04 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0014.g006276 | No alias | not classified & original description: CDS=1-1806 | 0.04 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0023.g008810 | No alias | not classified & original description: CDS=1-1683 | 0.05 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0024.g009076 | No alias | not classified & original description: CDS=1-1737 | 0.03 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0024.g009138 | No alias | component *(NRPC16/RPC34) of TFIIIe transcription factor... | 0.03 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0055.g014482 | No alias | not classified & original description: CDS=1-1119 | 0.03 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0151.g023411 | REME1 | not classified & original description: CDS=1-1494 | 0.03 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0152.g023491 | No alias | not classified & original description: CDS=1-2331 | 0.05 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0153.g023499 | No alias | not classified & original description: CDS=1-1593 | 0.05 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0208.g025848 | No alias | not classified & original description: CDS=1-2184 | 0.04 | OrthoFinder output from all 47 species | |
Sam_g02933 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Sam_g03385 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Sam_g04996 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Sam_g13588 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Sam_g16066 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Sam_g29286 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Sam_g34646 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Smo132819 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.03 | OrthoFinder output from all 47 species | |
Solyc10g005090.3.1 | Solyc10g005090 | Putative pentatricopeptide repeat-containing protein... | 0.03 | OrthoFinder output from all 47 species | |
Spa_g45537 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
Spa_g53271 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Tin_g05928 | CRR2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Tin_g08446 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Tin_g23468 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Tin_g44234 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e013166_P001 | Zm00001e013166 | Pentatricopeptide repeat-containing protein At4g14820... | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e021453_P001 | CRR28, Zm00001e021453 | Pentatricopeptide repeat-containing protein At5g06540... | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e034478_P001 | Zm00001e034478 | Pentatricopeptide repeat-containing protein At3g24000,... | 0.04 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | HCCA |
BP | GO:0006351 | DNA-templated transcription | IEP | HCCA |
BP | GO:0006397 | mRNA processing | IEP | HCCA |
BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
MF | GO:0016830 | carbon-carbon lyase activity | IEP | HCCA |
MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | HCCA |
BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
BP | GO:0097659 | nucleic acid-templated transcription | IEP | HCCA |
MF | GO:0097747 | RNA polymerase activity | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 420 | 446 |
IPR002885 | Pentatricopeptide_repeat | 319 | 348 |
IPR002885 | Pentatricopeptide_repeat | 392 | 417 |
IPR002885 | Pentatricopeptide_repeat | 295 | 314 |
IPR002885 | Pentatricopeptide_repeat | 215 | 262 |
IPR002885 | Pentatricopeptide_repeat | 519 | 565 |
IPR002885 | Pentatricopeptide_repeat | 115 | 161 |
No external refs found! |