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  5. Azfi_s0678.g081837

Azfi_s0678.g081837 (HTA10)


Aliases : HTA10

Description : histone *(H2A) & original description: CDS=127-525


Gene families : OG0000117 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000117_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0678.g081837
Cluster HCCA: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
AT1G54690 GAMMA-H2AX,... gamma histone variant H2AX 0.04 OrthoFinder output from all 47 species
Adi_g005118 GAMMA-H2AX,... histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g011160 HTA7 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g034181 GAMMA-H2AX,... histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g078410 HTA13 histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g082134 HTA6 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g16641 HTA6 histone *(H2A) & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g54113 HTA7 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene05349.t1 HTA6, Aspi01Gene05349 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene26194.t1 HTA6, Aspi01Gene26194 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g01576 HTA6 histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g78608 HTA2 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.09G032900.1 HTA7, Ceric.09G032900 histone *(H2A) & original description: pacid=50587494... 0.03 OrthoFinder output from all 47 species
Ceric.25G035000.1 HTA7, Ceric.25G035000 histone *(H2A) & original description: pacid=50593123... 0.03 OrthoFinder output from all 47 species
Ceric.28G045900.1 GAMMA-H2AX,... histone *(H2A) & original description: pacid=50570258... 0.03 OrthoFinder output from all 47 species
Dac_g06100 HTA6 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g12969 GAMMA-H2AX,... histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g15481 RAT5, HTA1, ATHTA1 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g10226 GAMMA-H2AX,... histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Len_g17428 GAMMA-H2AX,... histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Len_g37716 GAMMA-H2AX,... histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
MA_10425800g0010 HTA7 histone (H2A) 0.03 OrthoFinder output from all 47 species
Nbi_g40966 HTA2 histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g03457 GAMMA-H2AX,... histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0225.g026322 RAT5, HTA1, ATHTA1 histone *(H2A) & original description: CDS=44-520 0.03 OrthoFinder output from all 47 species
Smo166626 RAT5, HTA1, ATHTA1 Chromatin organisation.histones.H2A-type histone 0.04 OrthoFinder output from all 47 species
Smo170948 GAMMA-H2AX,... Chromatin organisation.histones.H2A-type histone 0.06 OrthoFinder output from all 47 species
Smo73637 GAMMA-H2AX,... Chromatin organisation.histones.H2A-type histone 0.04 OrthoFinder output from all 47 species
Tin_g04849 HTA6 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g12865 HTA7 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e012144_P001 GAMMA-H2AX,... histone (H2A) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0004097 catechol oxidase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP HCCA
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR032454 Histone_H2A_C 92 126
IPR007125 Histone_H2A/H2B/H3 41 89
No external refs found!